Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0280 ATGGATAGCATAGCAATCACGTTCGTCTATAAATACCAAGGAGAACCACTAAACTCAATCCATGCTATCATAGCTCTCTGTGCTTGTTGCCATCACTCATCCCTTTCCATCTCACACAACTCTAAGAGTCTCTCTTCAGCACTTGAACTTCACAACTCTGCAATGGCTTTTTTGTGGTTCTACATTGCTGTTTTTTCTGGGATTATTTTTTCAGCTCAATTCTGTGTTTCCGAGCAAGTGTATTCAGCCGGTGAGAGACAGATGGAGGACGATAAAGTGACAAATTTACCTGGACAACCAAAAGTAAACTTCAATCACTACGCTGGTTATGTCAAGTTAAGACCAGAAGAAGAAGAAAAAACACTATTTTACTGGTTTTTTGAAGCTCAAGAGGATTCGTTACATAAACCTCTTGTCCTTTGGCTCACTGGAGGACCTGGTTGTTCGTCTATTGCTTTTGGAGCAACACTAGAGATCGGTCCATTTCATGTAGATGACCATCAGCATATTATCATCAACAAATTCTCTTGGAACAGAGTTGCCAATATTATATTTTTGGAATCACCTATTAGTGTAGGTTTTTCTTACACTAATAATTCTGATGATTTATACAAGCTGGGTGATCAAGTGATTGCTTTTGATAACTATGCTTTTTTGGTTGGGTGGTTTAAGAGATTTCCAAGATTCAAATCCCATGAATTTTATATTATAGGAGAGAGCTATGGAGGACATTATGCTCCACAGCTGGCTGAGGTTATACATGAAGGGAACAAAAATGGCCCTTATATAAATCTTAAGGGATTCATGATGGGAAACCCTGTGATTAACCGTGTGACAGACTTGAAAGGCATATTTGATTTTGCTTTCTATCATGGCATAATTTCAAACCAAGTATATGATGGCATAAGAGAGAAATGCGATTTCATGACAAAAAACAATACAAAGGAATGTAGTTGGAACGTGGCCAAATTCGTAAAAGCCTATTCTGACATAGATGTATTTAGTATTTACTCTCCCGACTGTCTCTTGGCCCATGAAAGACCAGTTTCAAGTATGTTTGATGGTATACCGTATGCTGTCTCAGAATTTGACCTCGGGAATATGATTCCAACAATGGCTTACGATCCATGTAAGATTAATGACGTGGAGAAGTATTTCAATAGGAAGGATGTCCAAAAGGCCATTCATGCATACTTTCCTGACAAGTCTGATTCCTACACCATATGCAGCACTAAAATTAAAAAATGGAATGATTCGCCCAACACAGTTCTTCCAGTGATTCAAAAACTACTGCATGCTGGTTTACGCATTTGGATGTACAGTGGTGACAGTGATGGTAGAGTTCCATTCTTATCAACAAGATACAGTTTGGAAGAGCTAAAAATGAATGTGACAAAAGAATGGAGAGCTTGGTTTGAAGGAAGAGAAGTTGGAGGATGGGTGGAGGAGTATGAGGGTGGTCTGACTTTTGCCACCATTAGAGGTGCTGGTCATCAAGCACCAATTTATAAACCACGAGAAACTCTTTCTCTCTTCTACCACTTCCTTTCTGGTCAACCGCTTCCTTCCTCTTCCTTCTAA 1581 0.3915 MDSIAITFVYKYQGEPLNSIHAIIALCACCHHSSLSISHNSKSLSSALELHNSAMAFLWFYIAVFSGIIFSAQFCVSEQVYSAGERQMEDDKVTNLPGQPKVNFNHYAGYVKLRPEEEEKTLFYWFFEAQEDSLHKPLVLWLTGGPGCSSIAFGATLEIGPFHVDDHQHIIINKFSWNRVANIIFLESPISVGFSYTNNSDDLYKLGDQVIAFDNYAFLVGWFKRFPRFKSHEFYIIGESYGGHYAPQLAEVIHEGNKNGPYINLKGFMMGNPVINRVTDLKGIFDFAFYHGIISNQVYDGIREKCDFMTKNNTKECSWNVAKFVKAYSDIDVFSIYSPDCLLAHERPVSSMFDGIPYAVSEFDLGNMIPTMAYDPCKINDVEKYFNRKDVQKAIHAYFPDKSDSYTICSTKIKKWNDSPNTVLPVIQKLLHAGLRIWMYSGDSDGRVPFLSTRYSLEELKMNVTKEWRAWFEGREVGGWVEEYEGGLTFATIRGAGHQAPIYKPRETLSLFYHFLSGQPLPSSSF* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0280 526 Pfam Serine carboxypeptidase 97 518 IPR001563 GO:0004185|GO:0006508
Vra2g0280 526 SUPERFAMILY alpha/beta-Hydrolases 86 523 IPR029058 -
Vra2g0280 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 185 IPR001563 GO:0004185|GO:0006508
Vra2g0280 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 196 IPR001563 GO:0004185|GO:0006508
Vra2g0280 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 222 247 IPR001563 GO:0004185|GO:0006508
Vra2g0280 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 488 501 IPR001563 GO:0004185|GO:0006508
Vra2g0280 526 ProSitePatterns Serine carboxypeptidases, histidine active site. 488 505 IPR033124 GO:0004185
Vra2g0280 526 Gene3D alpha/beta hydrolase 87 343 IPR029058 -
Vra2g0280 526 ProSitePatterns Serine carboxypeptidases, serine active site. 236 243 IPR018202 GO:0004185
Vra2g0280 526 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 79 519 IPR001563 GO:0004185|GO:0006508
Vra2g0280 526 Gene3D - 377 414 - -
Vra2g0280 526 Gene3D - 423 518 - -
Vra2g0280 526 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 35 79 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0280 Vra-Chr2 2107511 2110187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0280 434 521 Calmodulin-binding Proteins AT2G22960 40.909 1.54e-16 76.3