Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0261 ATGGATTGTACATCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTGTAGCGCTGGTCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACACGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGGTGCACTAAATGAAGAATCTTGTGAGTTGGCTCGCGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTCAATCAGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTCCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCTGGTAAACAAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGATAAACATGAGGATTCAAATGATGTCACTGCAGACCAGACTTCCGGGTTTTCTGCAGACCAGGATTTGTCATCTGGGCAAATAAAGTCTAGCGAGTTGTCAAGGAGGCAAAGCAGTTGCACTGAAGTGAGTTCTTTAGGTAGGTGCTCATCATCTAGGAGCGTTGAGGAGAGTTCATCAAGTAGTGTAGTTCACCAGCACAAAGGATAA 831 0.4272 MDCTSARRTQKADREKLRRDRLNEQFVALVNILDPDRPKNDKATVIDDTIQLLHDLTSQVSKLKDEYGALNEESCELAREKNDLREEKASLQSDIEKLNCQYQQQLRTVSPWTAMDHSVMVVPPSYPYPVPMPIPPSPIAMQPYPFYANQHSAIIPNPCPTYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKCKESMVDKHEDSNDVTADQTSGFSADQDLSSGQIKSSELSRRQSSCTEVSSLGRCSSSRSVEESSSSSVVHQHKG* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0261 276 PANTHER TRANSCRIPTION FACTOR BHLH121 1 275 - -
Vra2g0261 276 MobiDBLite consensus disorder prediction 182 276 - -
Vra2g0261 276 CDD bHLH_AtILR3_like 11 85 - -
Vra2g0261 276 Gene3D - 4 79 IPR036638 GO:0046983
Vra2g0261 276 PANTHER TRANSCRIPTION FACTOR BHLH121 1 275 IPR044579 GO:0003700|GO:0055072
Vra2g0261 276 MobiDBLite consensus disorder prediction 196 216 - -
Vra2g0261 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Vra2g0261 276 SMART finulus 12 62 IPR011598 GO:0046983
Vra2g0261 276 Coils Coil 46 108 - -
Vra2g0261 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Vra2g0261 276 MobiDBLite consensus disorder prediction 217 269 - -
Vra2g0261 276 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0261 Vra-Chr2 1990116 1995171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0261 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.322 2.61e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g0261 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0261 - - gmx:100817000 385.956