Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0256 ATGTGGAAAGCAGCTTTAACAGAATTAACAGCAACTGCATCTCTGATGTTTGCCTTGACCACTTCGATTGTTGCATGCTTGGACTCAAAGGAGACTGATCCAAAGCTTCTTGTTCCCTTTGCAGTTTTCATCATAGCCTTTTTGTTCCTAGTTGTGACAGTTCCTCTCTCTGGGGGTCACATGAGTCCTGTTTTCACATTCATTGGTGCTTTGAAGGGTGTTGTCACTCTCACCCGTGCTTTCATTTACGTCTTAGCACAAATCATTGGCTCAATAATCGGTTTCTTTATACTAAAGTGCGTCATAGACCCCAAATTAGCCTACACATATTCCTTGGGAGGTTGTGCCATTGATGGCCAAAGAGTGAGTTTTGGCATTAAGCCACAGAATGCTTTGCTAGTGGAATTTACATGCACATTTGTGGTACTCTTTGTGGGGGTCACATTGGCATTTGACAAGAAAAGGTCTAGGGAGTTGGGCTTGCCAATGGTGTGTTTGGTGGTCGCAGGATCCATGGCATTGGCAGTGTTTGTGTCCCTAACTGTAACTGGGCGGGCCGGTTATGCTGGTGTGGGCCTCAACCCAGCAAGATGCTTAGGCCCGGCACTGCTTCATGGAGGACCACTCTGGCATGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCATGCATGGTGTATTATATTGTGTCTATGAACCTGCCAAAGGTGGATTTGGTTTGGCTTGAGGGAGAACATGATGTTTATGATACTTCTTTCCCAAAGGATCTGCCAGAACAATGCAATGCAGGGTTCCAAGTCTGA 804 0.4627 MWKAALTELTATASLMFALTTSIVACLDSKETDPKLLVPFAVFIIAFLFLVVTVPLSGGHMSPVFTFIGALKGVVTLTRAFIYVLAQIIGSIIGFFILKCVIDPKLAYTYSLGGCAIDGQRVSFGIKPQNALLVEFTCTFVVLFVGVTLAFDKKRSRELGLPMVCLVVAGSMALAVFVSLTVTGRAGYAGVGLNPARCLGPALLHGGPLWHGHWVFWLGPFLACMVYYIVSMNLPKVDLVWLEGEHDVYDTSFPKDLPEQCNAGFQV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0256 267 PRINTS Major intrinsic protein family signature 3 22 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 PRINTS Major intrinsic protein family signature 42 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 PRINTS Major intrinsic protein family signature 134 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vra2g0256 267 Pfam Major intrinsic protein 2 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0256 267 PANTHER AQUAPORIN-LIKE 1 251 - -
Vra2g0256 267 SUPERFAMILY Aquaporin-like 1 228 IPR023271 -
Vra2g0256 267 Gene3D Glycerol uptake facilitator protein. 1 234 IPR023271 -
Vra2g0256 267 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0256 Vra-Chr2 1974004 1975056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0256 3 256 Major Intrinsic Protein MIP AT1G73190 27.881 5.37e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0256 K09866 - gmx:100804160 441.425