Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0251 ATGGAAGCTATTTTCGTTCCCAAACCAGCTTCTCATTCTCACTTCAAAACTAAATTCTCTTCAAACCCCAAACACTTCCTTAAACAACAAACATTTCTCTCCATCCGCCAAAACCCCAGGCGCTTCTGCCTCGTCACCACCGCACTCCAAAACCAACAGCAAGCAGCTTCCAAAGACACAGAAGACGAGTCCTATGGAGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACGCCGCCGCCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGAGCCCTCTTGGGTTCCGGCAGACTTCATAGCCAAAGACGTCGTCGCCGAGTACGAAACCCCATGGTGGACCGCCGCGAAGAAGGCCGATGAGCCCGCGCTGAGGAACCTCCTCGAATCCGGCGACGGCCGTGATGTCGACGCTGTGGACGCCGAAGGTCGTACCGCGCTCCTCTTCGTAGCGGGACTTGGCTCGGAACCGTGCGTGAAGCTGCTGGCGGAAGCCGGCGCGAACCTGGACCACCGCGACCGCAGCGGCGGTCTCGCTGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGTGTTGCGAAGGTGCTGCTGGATTTGGGCGCGGATCCTGAGGTGGCGGATGACCGTGGAAGAACGGCGTTGGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGGAATCCGATTCAGTTCGGGCGCAGGATTGGGCTTGAGGGAGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGCGGAGGTGGAGGAGATTCTTGAACGGAGAGGGAAGGGAGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGGTGCGAATGAGTGGGTGAAGGCAAAGTTTGTGGCGGAGGATCTCGTCAGAGACTACGAAGCTGGCCTTGAATACGCCGTGGCCGAGGCAGTGCTTGCGAAAAGGATCGCGGATGAAGGGACGCCGGAGTTTTTAGTTAAATGGGCCGATTTAGATGAGCCCACTTGGGAGCCCCAGGAGAATGTGGATCCTGACCTTATCAAAGCTTTCGAGGAAACAAACAACCAGGCGCAGCCCAGTAGTAATGGGCCTGCTGTCATTGTTTCCCATCAAGATAACCCGTAA 1125 0.576 MEAIFVPKPASHSHFKTKFSSNPKHFLKQQTFLSIRQNPRRFCLVTTALQNQQQAASKDTEDESYGEVKGIIGSRALDAAAGMEYLIEWKDGHEPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNLLESGDGRDVDAVDAEGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKATPKGNPIQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEGTPEFLVKWADLDEPTWEPQENVDPDLIKAFEETNNQAQPSSNGPAVIVSHQDNP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0251 374 ProSiteProfiles Chromo and chromo shadow domain profile. 306 362 IPR000953 -
Vra2g0251 374 Pfam Chromo (CHRromatin Organisation MOdifier) domain 308 352 IPR023780 -
Vra2g0251 374 Gene3D - 252 301 - -
Vra2g0251 374 Gene3D - 62 109 - -
Vra2g0251 374 ProSiteProfiles Chromo and chromo shadow domain profile. 256 285 IPR000953 -
Vra2g0251 374 Pfam Ankyrin repeats (many copies) 165 220 IPR002110 GO:0005515
Vra2g0251 374 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Vra2g0251 374 Gene3D - 110 251 IPR036770 -
Vra2g0251 374 SUPERFAMILY Chromo domain-like 254 301 IPR016197 -
Vra2g0251 374 PANTHER HOMEOBOX PROTEIN WARIAI 1 357 - -
Vra2g0251 374 ProSiteProfiles Ankyrin repeat region circular profile. 145 177 - -
Vra2g0251 374 ProSiteProfiles Ankyrin repeat region circular profile. 179 211 - -
Vra2g0251 374 SUPERFAMILY Ankyrin repeat 100 222 IPR036770 -
Vra2g0251 374 SMART ANK_2a 179 208 IPR002110 GO:0005515
Vra2g0251 374 SMART ANK_2a 110 141 IPR002110 GO:0005515
Vra2g0251 374 SMART ANK_2a 145 174 IPR002110 GO:0005515
Vra2g0251 374 ProSiteProfiles Ankyrin repeat profile. 179 211 IPR002110 GO:0005515
Vra2g0251 374 SUPERFAMILY Chromo domain-like 62 115 IPR016197 -
Vra2g0251 374 Gene3D - 302 354 - -
Vra2g0251 374 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 357 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Vra2g0251 374 SMART chromo_7 254 304 IPR000953 -
Vra2g0251 374 SMART chromo_7 64 116 IPR000953 -
Vra2g0251 374 SMART chromo_7 305 355 IPR000953 -
Vra2g0251 374 CDD CD3_cpSRP43_like 303 351 - -
Vra2g0251 374 MobiDBLite consensus disorder prediction 351 374 - -
Vra2g0251 374 SUPERFAMILY Chromo domain-like 304 356 IPR016197 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0251 127 220 CAMTA Transcription Factor Family AT5G09410 37.000 5.21e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0251 K12271 - gmx:100818382 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0251 2 1952816 1954171 Vra2g0251 2 1952816 1954171 ECH