Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0244 ATGGCCACCATGGAAGACATGAGCATGAGTGGAGAAATTGCACTTCCTGGCTTCCGATTCCACCCCACAGAGGAAGAGCTTCTGGATTTCTATCTTAAGAACATGGTTGTTGGCAAGAAACTCCGTTACGACGTTATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTACCTGATTTGGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAGCATGGAAGCGGAGGAAGGCCAAACCGGACCACCGAGAAAGGGTTTTGGAAAGCAACCGGCTCAGACCGGAAAATAGTCACTCTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCCCCCAGTGGCCGCAAAACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAATTACCCAAGGAAATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTGGAGGAAAGAGCAGAGAGAGAGATGAAACAAATGGTGGGTTCCCCTGCTTCTCCTCCTTCATCGACGGACACCATGTCCTTCAGCAGTCCACAGGAAGAGGCAAACGTGACCTTGCCTCTGCCATTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAATCTGAAGAAACAATGGGTTGTGTAGTGCCTAAACAAGAGAAAACAAACAACAACAAAGGTAGTTGTGGGGCATCTTCCCTACAAATGCCCTTTGGGAAGGACAATCTTCCGGACCTGCAGCTTCCCATGTTAACAGATTGGACCCAAGATACCTTCTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTAACTCCTTCCAACATCTTAAACTTTTACTGA 879 0.4699 MATMEDMSMSGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPDLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEANVTLPLPLLQHVLKKESESEETMGCVVPKQEKTNNNKGSCGASSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNLTPSNILNFY* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0244 292 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vra2g0244 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 291 - -
Vra2g0244 292 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Vra2g0244 292 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Vra2g0244 292 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 6 291 - -
Vra2g0244 292 MobiDBLite consensus disorder prediction 176 195 - -
Vra2g0244 292 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Vra2g0244 292 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0244 Vra-Chr2 1887524 1888846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0244 9 292 NAC Transcription Factor Family AT2G17040 60.490 7.84e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g0244 NAM 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0244 - - gmx:732555 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0244 2 1887524 1888846 Vra2g0244 2 1887524 1888846 ECH