Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0243 ATGCTTCAAAGCTTGGTCCCGCGATCCCCACGCACTTCCAACCCTAACGACATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAACCTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCCACCGAGGACGACCAGGCCTTCGATCCCCAACCCCACGCCGCCGAGTCCACCGGCCTCAAGCTTCTTGGCCTTCTCCTCCAATGTGCCGAGTGCGTCGCCATGGATAAACTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCGGAACTGTCTTCTCCGTTCGGTACCTCGCCGGAGCGCGTCGGGGCTTACTTTGCGCAGGCGCTGCAGGCGCGTGTGGTGAGCTCCTGCCTCGGCTCGTACTCTCCGCTGACCGCGAAATCTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTACAACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACTGCGAACCAGGCTATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCGATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCTCGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTCCTCGACTCTACCGGCCGGAGACTCGCGGATTTCGCGAGCTCGCTTGGGCTGCCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTGACCGAACTGAGTCAACTCGGCGTTCGAGCCAGCGAGGCGATCGTGGTGCACTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAGGACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTACGGACAGCCTCGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGGAACATCGTGGCGGTGGGCGGGCCTAAAAGAACCGGTGAGGTTAAGGTGGAGCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCCGGGGCAACCCTGCTGCACAGGCCAGTTTGTTGCTTGGAATGTTCCCTTGGAGAGGTTATACGCTGGTTGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAAGGACCTTTCTCTGTTGATTGCCTCTGCTTGGCAACCCTCTGATTTGATTACTTACCCGGATTGA 1314 0.5807 MLQSLVPRSPRTSNPNDMKTKRPVDTADSPADQPSFKRTNFSADTATEDDQAFDPQPHAAESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRASEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGTDSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0243 437 MobiDBLite consensus disorder prediction 1 43 - -
Vra2g0243 437 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g0243 437 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 429 IPR005202 -
Vra2g0243 437 Pfam GRAS domain family 69 428 IPR005202 -
Vra2g0243 437 ProSiteProfiles GRAS family profile. 58 428 IPR005202 -
Vra2g0243 437 PANTHER SCARECROW-LIKE PROTEIN 23 17 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0243 Vra-Chr2 1878133 1880783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0243 18 431 GRAS Transcription Factor Family AT5G41920 66.508 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0243 GRAS 7.1e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0243 - - pvu:PHAVU_011G024600g 804.668