Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0238 ATGGGACTCGTGTGGCTAGAAGAAGGGTCGTCGTCTGTAAGTTCTTCACCCCTGCAGCTCTTCTCCATGATGTCACTTTCACCTAGTTTAAGTTCTCCCAACAATCTCTTGCTTAGAGAAATGAAATCCGAGGAAAGAGGTTTGTACTTGATCCATTTGCTGCTCACTTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAATGCCACACTGGAGCAAATTTCACTGCTTGCTTCCCCTGATGGGGATACCATGCAGCGAATCGCAGCATATTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAAAGTTACTATGCTGTCTGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATGTTCTCACAAATCAGGCCATCATTGAGGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTACTCAGTGGATTGCCCTCCTCCAAGTTTTGAGTGCTCGTCCCGAAGGCCCTCCTCATTTGAAAATCACTGGGATTCATCAGAAAAAGGAGATTCTGGATCAGGTAGCTCATAGACTAACTGAAGAGGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAACTTGAAAATCTTGATTTTGACAAACTTCGAGTGAAAACTGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGATGAAGCCTTGCGGAGAAAATCTCCTCGTCTGTTAAAAGGCTCAAACGGAATTCACATGCAAAGAGTCCTGCCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGGTCAATGGGTACACCCCTAGTCCTGACTCAACCTCGTCATCACCAGCATCTTTTACTACTTCCAATTCAATGAACATGGAGAGCTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGCTGTGACAGAGCAAGACTGCAACCACAATGGTCCAACTCTGATGGACAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGACTGTTTGGAATCAACAGTCTCAAGATCCTCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTTGGGGAGGAAATAAAGAACATCATTGCATGTGAAGGGCCTGATCGAAAGGAGAGACACGAAAAGCTTGAAAAGTGGTTCCAGAGATTTGACCAAGCTGGGTTCGGTAATGTGCCTCTGAGCTACTATGGTATGATGCAAGCAAGGAGGTTCGTCCAGAGCTATGGCTCTGAAGGATACAGAATGAGGGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1434 0.44 MGLVWLEEGSSSVSSSPLQLFSMMSLSPSLSSPNNLLLREMKSEERGLYLIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTKVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIIEAMEGEKVIHIIDLNAAEATQWIALLQVLSARPEGPPHLKITGIHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAFDDEALRRKSPRLLKGSNGIHMQRVLPLSQTTLGDMLEKDMVNGYTPSPDSTSSSPASFTTSNSMNMESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRSSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEKWFQRFDQAGFGNVPLSYYGMMQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWRSRK* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0238 477 Pfam GRAS domain family 50 474 IPR005202 -
Vra2g0238 477 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 476 IPR005202 -
Vra2g0238 477 ProSiteProfiles GRAS family profile. 41 474 IPR005202 -
Vra2g0238 477 PANTHER SCARECROW-LIKE PROTEIN 3 7 476 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0238 Vra-Chr2 1826055 1828577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0238 7 477 GRAS Transcription Factor Family AT1G50420 64.375 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0238 GRAS 3.3e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0238 - - gmx:100814131 814.298