Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0236 ATGGAGTTTGTGGGGAAGGCAGTTAAGAAAGAGGTGAAGGGGTTTGGGATTATTTCGGGAACAGTGAAATCGTACGATTCTGCGTCTGGTTTTTTGGAGATCGTTTACGAAGATGGTGATTCTGAGGAATTGGAGTCTTCTGACGTGGCTTCTCTCTTGCAATTTCAACCGGAGAGTGTCAAGGCTAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGATGCCGGGTCGAGAGGAAGCGCGATGTTGGAGCAGGTTCAGGTAATGTTAGAGAGAATTTGGTGGCGGAGGGTACTGGTTTTAGGGGGGTTTTGGATGGGGATATTTCTTCTGCTAGTGGTGGGGGTTTGGATTTAGATAGTGGTGTTTTAGAGAGAAAGTTGGATGGTATAGTTGGGAATGGAGGGAATCTTGAGAGCAATGCTAATGGGACTAAGGAGGAAAATGGGGTTAGAGAAACTCTGATAGAGGAAATTAGCTTAGAAGATAGTTTGAACAAGAGTATATCCGGAAATGTTAGTTGTGCTAAAGATGGACTTGATTTGAATGCTGGGCTTAATCTGGATGAGGATTTAAATTTGGATGTGAGTAATGAGGATCGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGACGTAGGCCGGGGAGAGGCAATGCAGCGGGAATGTAACTTTGATTTAAATGTGGAGGTAGTATGTGAAGAAGGTAAGGAAACACGGTGTGATGGTGACGGAAATGGACATTCTTTGGTGGATAATGCTTTGTTTGGTAAGATGGGGCTGTCCCAAAAGGAAGACATAAATGTTAATAACAGTTTTGTGGAAGGTGACGGCATTAATGGTAATTTGAATCACGCCTTTGATGCGGTTAAATTGGAGGTAATTCATGTTTCTGCTGATCATCCATCTAAAGAAGGTTCTTTGTGTTTGATTGAGGAAAATGGAGGAGACAGTCGCAAAGAAGACGCAGGGACTATTAATTCTCATCAGATTTCAAGTGCAATTTCTGTTAGGGATTCAGATTTTGGTGAGGCTCAGCTAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATGAATATCAAGATGATCCAGGAAGTCCTTGCAAACAAGAAAAATTCCTAGATGTTTCAGAAAGTCCATGCAAACAAGAAAATAGCAGAAGGAAAAGAAGAAAATTAGCAGATAATCCAGGAGCCATGCCAGAGACAGTTTTAAGGAGGAGCTCTCGTCGGGCATCAGCTAGAAAAGGGGTTTCAAGCACCTTAGAAGTGGAAGTGGCTGATGATCCTTTGGTAACCTTGGGAACTGATGTCTTAACAGAAGAAAAACCTCTAATCCTTGTTTCTCAGAAATCTGAGCAATATAACAATGATCTGAGATACAGGCAATGCAACAATCTTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGGTGTTCCTGTTCTTGAACTGTTTTCTATTTATGCCTGTTTAAGATCATTCAGTACTTTGTTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTGGCTGCACTAAAGTCTGAAATTCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGGAAGCAGTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGTCTGAGGAACCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCAGAGTACCTTCTGATTCATGGCTCGGGATTTAAAACTGGTTTTGATATTAAACATCTAATGTTCAGAACTGATTACTATAGACAACCTGTAACGGTAAAGGTCGAGATTCTCCAGTACCTGTGTGATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTTACGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACGCATCCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACCGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGACGGATGCCCTGCTGCATTCCATTCACGATGTGTGGGAATTGCCAGTGACAAACTGCCAGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCGGACCTATTAGGGATGGATATGGATGGCAGTGTCTATTTCAACAGCTGCAGTTACCTGCTAGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTACTACCACCGAAATGATATACACATAGTAATTGAAGCTCTAAAATCTATGGGTCCTTTATATAGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAAAGCTAACTTGAATGTAGTGGATAGTGTCTTTAATCAAAGTTCCAGCAAGAACATGCAGATGAAGGGAGAATATTCTACTAGGTATACATCTTTGGCACCTTCTACTTCAGAGATATGTTTGGACAATAATCAGGCCAATGGTCAAGGAAAGTTGGATGAAAATTCAACTGTTGACTGTTGTATGCGACTTGGCCAAGAGTTTCCTAAAGTTGGGAACTGCCTAGACTCAACGATCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTGATACCACACAGACGAGAACAGGCACCAACAATGTTCAGACGTGTGGGCTCAATGATTTCAATAGATGTAATGAATCCTTGAATCAGCCAGGAGTACCAGAAAGACACTATCCCGACTGTTCTTTGACATCTTCCAGCTTGGATGCGGGGCATAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCCCAGACAGTAAGGATACTTCAGAAGGACCTTGTGGAATTGAATATGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCACAGGAGTTGATGTGTAAGTCGCCTGAGAAAATGAATAAGATTTTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAACCAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCCCGAACTGGATGCAGCTGCTCAAAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGCTAATGAAGACAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTGTCCAATAGCACTTCGGTTGGGCCTCAACCCAGGAATATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTATTGGGTCCGTGGCTTAATCTGCATCAAACAAATCTTTGGCATAAAGATCTTTTGAAGACATCTGATTTTCTTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGGTCCGCTATTCATATTGTGGTTTCACGCACATCTTCCAGGCATGGTATTGCAAAGAAAAGGGCCAGGTATTCAGATACTGAAACCAGTTCATCTTCAAACAGTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCAGTCCTTGGTTGCCAAGGCTGCTAGACAAGGTGGGTGTAAGAAGATACCTGGAATTTTATATCTTGAGAATTCAGACTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATATCTTATTGATTTTGGAAAGAGAAGGGCTATTCCGGATGTTGTTATTAAACATGGCTCTCTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAATCTTATGTTCCAATGCATCTTCTAAAAAATTTTGAGGACAAAAGAATTGTTCGGAAATCCACTGATAAGAAACTTGGAAAAATGCTTGAGATTGGTAAAGTAAACAAGAAAGTTCCTCAAGAAAGGGGATTTTCATATCTGTTTACTAGATTGGAAAGATCTGATTGTCATCAATGCGGGCTCTGCAACAAAGATGTTTCAGTGAGGGATGCTGTGAGGTGCCTCCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAGGTAGCACAACAAATACTGGAAGCACATATTCATGTCACAGATGTCAGGATGGGTTGCATGCAAATACTAATACCAATAAAAGAAAAGTTGGCTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTAAGTCAGTAAACCTCAAGGGCAACAAGAAGGCATTGAGTAAGGTACGCCAGGGAAGATCTCGAAACAGTAAGAATATCCAATCAAGTGTACCTCTTCGCCGATCTACTAGAAAGGCCAAATCCCTGTATATGCAAAGTCAAATGAACGGTGGACGTAAAAAAGGAAAGCCTGGTAAAAAGAATGTGGGACGTAAAAAGGGAAAGCAAAGTAAATCCAAGAAGGTGACCTCTCCGGAGTCCAATGAACCTACTGGTGAATATGCAAAGTTAACAGTAACTACACGAGGGACGAGAACAAAGTTCTGTAGCAGTTATTGGCTTAATGGTCTTCGGTTGTCTCGAAAGCCAAATGATGAGCGAGTATTGCTATTTAAAGAGAAGAAGACCATTGTCTCCTCTGAAGACTTTTCTGGCTCTCTTGACTGTCTTAACTGCTGCCTTTGTTGTGGAAATGGATACACCTTGAATTATATTGCGTGTGAAATATGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGACAATGTCAAACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATCTGTCCTCATGTGAAAATTAATGCATTTTCTCGTCCTGAAAGCAGTGCTGCAAATGAGTGTGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTAAGTGAGGTTTGA 5229 0.4119 MEFVGKAVKKEVKGFGIISGTVKSYDSASGFLEIVYEDGDSEELESSDVASLLQFQPESVKAKPRVGRKPKKRCRVERKRDVGAGSGNVRENLVAEGTGFRGVLDGDISSASGGGLDLDSGVLERKLDGIVGNGGNLESNANGTKEENGVRETLIEEISLEDSLNKSISGNVSCAKDGLDLNAGLNLDEDLNLDVSNEDRLKRRDCIDLNLDVSNEDDVGRGEAMQRECNFDLNVEVVCEEGKETRCDGDGNGHSLVDNALFGKMGLSQKEDINVNNSFVEGDGINGNLNHAFDAVKLEVIHVSADHPSKEGSLCLIEENGGDSRKEDAGTINSHQISSAISVRDSDFGEAQLVDCPSEGGIAIIHEYQDDPGSPCKQEKFLDVSESPCKQENSRRKRRKLADNPGAMPETVLRRSSRRASARKGVSSTLEVEVADDPLVTLGTDVLTEEKPLILVSQKSEQYNNDLRYRQCNNLLPKLQLPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKQLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDIKHLMFRTDYYRQPVTVKVEILQYLCDDMIESEAIRSELNRRSLVTETDMGFDQNMYFDASKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRAWMKSRRSLRGADLLGMDMDGSVYFNSCSYLLVSSSSEAGPLFYYYHRNDIHIVIEALKSMGPLYRGILMAIYKHWDIKANLNVVDSVFNQSSSKNMQMKGEYSTRYTSLAPSTSEICLDNNQANGQGKLDENSTVDCCMRLGQEFPKVGNCLDSTITIESPCVASDGSADTTQTRTGTNNVQTCGLNDFNRCNESLNQPGVPERHYPDCSLTSSSLDAGHKINLRSVGASSTPSPDSKDTSEGPCGIEYVNYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEFISDQTKVIMKKSTNFCWPSIPELDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSTSVGPQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLRVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAIHIVVSRTSSRHGIAKKRARYSDTETSSSSNSASGLGMYWWRGGRLSRKLFNLKALPQSLVAKAARQGGCKKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQVRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEDKRIVRKSTDKKLGKMLEIGKVNKKVPQERGFSYLFTRLERSDCHQCGLCNKDVSVRDAVRCLHCKGYFHKRHVRKSGSTTNTGSTYSCHRCQDGLHANTNTNKRKVGSKLQKIQAKKRKTVPSVCKSVNLKGNKKALSKVRQGRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRKKGKPGKKNVGRKKGKQSKSKKVTSPESNEPTGEYAKLTVTTRGTRTKFCSSYWLNGLRLSRKPNDERVLLFKEKKTIVSSEDFSGSLDCLNCCLCCGNGYTLNYIACEICGDWFHGDAFGLNVDNVKQLIGFKCHVCLDRTAPICPHVKINAFSRPESSAANECAEELSNPVSLQPLSEV* 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0236 1742 MobiDBLite consensus disorder prediction 1527 1557 - -
Vra2g0236 1742 CDD PHD1_AIRE 689 731 - -
Vra2g0236 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 751 IPR013083 -
Vra2g0236 1742 SUPERFAMILY FYVE/PHD zinc finger 1424 1480 IPR011011 -
Vra2g0236 1742 MobiDBLite consensus disorder prediction 384 424 - -
Vra2g0236 1742 SUPERFAMILY FYVE/PHD zinc finger 673 732 IPR011011 -
Vra2g0236 1742 MobiDBLite consensus disorder prediction 1562 1580 - -
Vra2g0236 1742 ProSiteProfiles Zinc finger PHD-type profile. 687 734 IPR019787 -
Vra2g0236 1742 PANTHER PHD FINGER FAMILY PROTEIN 1 1718 - -
Vra2g0236 1742 MobiDBLite consensus disorder prediction 384 404 - -
Vra2g0236 1742 SUPERFAMILY FYVE/PHD zinc finger 1641 1702 IPR011011 -
Vra2g0236 1742 ProSitePatterns Zinc finger PHD-type signature. 690 731 IPR019786 -
Vra2g0236 1742 Pfam PHD-finger 690 731 IPR019787 -
Vra2g0236 1742 ProSiteProfiles DDT domain profile. 492 552 IPR018501 -
Vra2g0236 1742 CDD PHD_SF 1430 1475 - -
Vra2g0236 1742 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 606 638 IPR028942 -
Vra2g0236 1742 SMART testlast3 492 552 IPR018501 -
Vra2g0236 1742 SMART PHD_3 1654 1700 IPR001965 -
Vra2g0236 1742 SMART PHD_3 1429 1476 IPR001965 -
Vra2g0236 1742 SMART PHD_3 689 732 IPR001965 -
Vra2g0236 1742 Pfam DDT domain 496 548 IPR018501 -
Vra2g0236 1742 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1718 - -
Vra2g0236 1742 MobiDBLite consensus disorder prediction 1481 1598 - -
Vra2g0236 1742 MobiDBLite consensus disorder prediction 1583 1598 - -
Vra2g0236 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1647 1706 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0236 Vra-Chr2 1788581 1803211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0236 1 1711 PHD Transcription Factor Family AT5G12400 40.204 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vra2g0236 DDT 7.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0236 - - vun:114169688 3145.53