Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0194 ATGAAATGCTGTGATGTGATTTGCAGAGAAGAGGGAATGGCTTACATGTGTGCAGACAGTGGAAACCTCATGGCCATTGCGCAGCAAGTCATCAAGCAGAAGCAGCAGCAAGAACAGCAGCAGCAGAAACAGCATCAGCAGCACCACCAACATCATCATCATCATCACCATCACCACCATCACCAACATCATCTCAACCCTCTCTCTTTACATCCAATTCCATGGAACAACACTCCCACTCTCGGCTACCCTCTCCATCCCACCGACTTCCCCGACCCCTTCCAACCCGATCCCCCATTCCACTTCCCGGACACCCAATCCGCACCCGCACCGGCTCCCTTCCGCTTCTCCGATTTCGACTCCGACGACTGGATGGACTCCCTCATCGCCGCCGCCGACACCCCCACCTGGCACACCAATGCCGATTTCCCCTTCCCCTCCGATCTCAACCGTCTCATCTTCCCCTCCTCCGACACCGCCGCCGCCGCCTCGCTCCCGCTCCAACCAACACCTCCCCCGCCGCCGCAGGAACCCGTCAACGCCGGCCTCTCCTCCGAACCCGAGTCCGCTCACCCGCTCCTCAAAGCCCTAACAGAGTGCGCCTCCCTCGTGGAAAGCGAACCGGATCAGGCCGCGGAATCCCTCGCCCGGCTGAGAAAATCAGTATCGCAGCACGGAAACCCCACTCAGCGAGTGGGCTTTTACTTCTGCGAAGCCCTCTCCCGTAAAATATGGGCCGAGCAGGACAAGGGAGAGCCCAAAAGCGCGAAGACAACCACCTCAGAGGAGTTGACGCTGTCTTACAAAGCCCTCAACGATGCCTGCCCTTACTCCAAGTTCGCACACTTAACCGCCAATCAAGCCATCTTGGAAGCCACCGAAGACGCCTCCAACATCCACATCCTGGACTTCGGCATCGTCCAAGGGATTCAGTGGGCCGCGCTCTTGCAGGCTTTCGCCACTCGCTCTTCCGGAAAGCCCAATAAGATCAAAATCTCTGGGATTCCCGCCATCGCTCTTGGGGCCTCTCCCGGCCCATCTCTCTCCGCCACCGGCAACCGCCTCTCCGAGTTCGCCAAGCTCCTCGACCTGAACTTTGAGTTCACGCCTATTCTCACTCCCATTCACGACCTCGACCGCAACAGCTTTTGCATTGACCCCGACGAGGCCCTGGCCGTGAACTTCATGCTCCAGTTGTACAACCTCCTTGACGAGCCTCCGACCGCCGTTGACACCGCCCTCCGGTTGGCGAAATCTCTCAACCCCAAAATTGTTACCCTCGGCGAGTACGAGGCAAGCTTGACACGTGTCGGCTTTGTGAACCGCTTCAAGACCGCGTTCAGGTACTTCTCCGCCGTTTTCGAGTCGCTGGACCCTAACTTGGCCGCGGACTCACCGGAGAGGTTTCAGGTGGAGAGCCTTCTCCTGGGACGGCGAATCGACGCGGTGATTGGGCCTGGGCCTGTGAGGGAGAGTATGGAGGACAGGGAGCAGTGGAGGGCTCTGATGGAGCGTGCTGGGTTTGAGTCTGTGAGTTTGAGTCATTATGCAGTTAGTCAAGCGAAGATACTTCTATGGAATTACGGTTACAGCTCTCTGTTTTCGCTGCTTGAATCCACGCCGCCGGGCTTCTTAACTCTCGCTTGGAAAGATGTTCCTCTCTTGACTCTCTCCTCGTGGCGCTAA 1686 0.5777 MKCCDVICREEGMAYMCADSGNLMAIAQQVIKQKQQQEQQQQKQHQQHHQHHHHHHHHHHHQHHLNPLSLHPIPWNNTPTLGYPLHPTDFPDPFQPDPPFHFPDTQSAPAPAPFRFSDFDSDDWMDSLIAAADTPTWHTNADFPFPSDLNRLIFPSSDTAAAASLPLQPTPPPPPQEPVNAGLSSEPESAHPLLKALTECASLVESEPDQAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWAEQDKGEPKSAKTTTSEELTLSYKALNDACPYSKFAHLTANQAILEATEDASNIHILDFGIVQGIQWAALLQAFATRSSGKPNKIKISGIPAIALGASPGPSLSATGNRLSEFAKLLDLNFEFTPILTPIHDLDRNSFCIDPDEALAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLDPNLAADSPERFQVESLLLGRRIDAVIGPGPVRESMEDREQWRALMERAGFESVSLSHYAVSQAKILLWNYGYSSLFSLLESTPPGFLTLAWKDVPLLTLSSWR* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0194 561 ProSiteProfiles GRAS family profile. 184 561 IPR005202 -
Vra2g0194 561 Coils Coil 24 47 - -
Vra2g0194 561 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 194 560 IPR005202 -
Vra2g0194 561 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 194 560 - -
Vra2g0194 561 MobiDBLite consensus disorder prediction 162 188 - -
Vra2g0194 561 Pfam GRAS domain family 194 561 IPR005202 -
Vra2g0194 561 MobiDBLite consensus disorder prediction 84 113 - -
Vra2g0194 561 MobiDBLite consensus disorder prediction 89 106 - -
Vra2g0194 561 MobiDBLite consensus disorder prediction 166 180 - -
Vra2g0194 561 MobiDBLite consensus disorder prediction 46 66 - -
Vra2g0194 561 MobiDBLite consensus disorder prediction 30 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0194 Vra-Chr2 1449419 1451932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0194 13 561 GRAS Transcription Factor Family AT5G66770 55.887 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0194 GRAS 1e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0194 - - vra:106779206 1001.89