Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0193 ATGGGAGACGAAGACGACGACGAGGTGCTCGGTTGCGCCACCACCGCTTCTGGTCAATCCGCCTCCACCAACAGCTTGCCACCTCCTGCCGATAACACACTTCTCAAATTGAACCATCTCGACTTACACGCTGATGACGCTGGATCACAAGCCTCTCTTGCTGGCAAGAAGAAAAAGAGAGGCCAGCGCGCAGTTGGACCGGACAAGAGTGGAAGAGGTCTCCGACAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGAAGAACAACTTACAATGAGGTGGCAGATGAGCTTGTTGCTGAATTTTCTGATCCAACCAATAGCGAATTAACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGCCGAAGGGTGTATGATGCTCTGAACGTTCTCATGGCGATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGACTTCCTCGTACCAGTGTGAATGATATTGAAGAAATAAAGACAGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTCGTAGGCCTTCAGAACCTTATTCAAAGAAATGAGCAGTTGTATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTAGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGTTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGCAAGATAACACGACGCACAATTTTACCGTTGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGCCAACCACAGGGTCCTTCTACAAATCTAAAAGTGTCAAATAGGCCTCCAACCTCACCTCCTCTCCCTGGCATATTAAAGAGAAATTGGCTTCAGTCGGTAGACCGTCATAATAGTTATTCAGCAGTACAGCCAAATCATTCTGTAGGTTAG 1014 0.4487 MGDEDDDEVLGCATTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPTNSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEEIKTERLGLRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQQDNTTHNFTVGGEGSSMSGLCQPQGPSTNLKVSNRPPTSPPLPGILKRNWLQSVDRHNSYSAVQPNHSVG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0193 337 MobiDBLite consensus disorder prediction 49 73 - -
Vra2g0193 337 Coils Coil 168 202 - -
Vra2g0193 337 SMART DP_2 159 319 IPR014889 -
Vra2g0193 337 MobiDBLite consensus disorder prediction 269 302 - -
Vra2g0193 337 CDD DP_DD 157 260 IPR014889 -
Vra2g0193 337 Pfam E2F/DP family winged-helix DNA-binding domain 72 152 IPR003316 GO:0005667|GO:0006355
Vra2g0193 337 Pfam Transcription factor DP 160 273 IPR014889 -
Vra2g0193 337 MobiDBLite consensus disorder prediction 1 33 - -
Vra2g0193 337 SMART E2F_TDP_2 69 152 IPR003316 GO:0005667|GO:0006355
Vra2g0193 337 PANTHER TRANSCRIPTION FACTOR DP 21 315 IPR015648 GO:0005667|GO:0051726
Vra2g0193 337 Gene3D Transcription factor DP 158 277 IPR038168 -
Vra2g0193 337 MobiDBLite consensus disorder prediction 13 31 - -
Vra2g0193 337 SUPERFAMILY "Winged helix" DNA-binding domain 72 153 IPR036390 -
Vra2g0193 337 SUPERFAMILY E2F-DP heterodimerization region 159 273 IPR037241 -
Vra2g0193 337 MobiDBLite consensus disorder prediction 269 311 - -
Vra2g0193 337 PANTHER TRANSCRIPTION FACTOR DP 21 315 - -
Vra2g0193 337 Gene3D - 65 157 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0193 Vra-Chr2 1438382 1442091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0193 70 270 E2F-DP Transcription Factor Family AT5G02470 54.455 2.02e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vra2g0193 DP 6.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0193 K04683 - gmx:100798342 558.14