Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0175 ATGAGAGATATTTGTCGAAACTTCCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGCAGATATTTACATGTCAACAACCAACAGAGAAAACCTAACGTTCAAGGGTTTGGAGGACAAAACGGTTCTCACCAACAGAAAAGTACAAATCCCTTTGGATTTGGGTCTGGTTCTGGCTCTGGCTTTGGGTCACAACAACAACAGAAGTCTAATCCTTTTGGTTTTGGCACGCAGAACAGTTCCCAGTTAAATGGGGGGCCTCGTTCTGAGTATAAACCGAACCAATACAAGCCTTTTGAAAACAAATGGAATCGACAGTCGTCCAAACCCCAGAATGGTGGGAAATCTGACAACAATCCCCAACCAGTAGATCATAAATGCACAGATCCTGAGAACTGCAAGCGCCAGATTGCAGAAGATTTCGAGAAAGAGAAACCAATTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTTTGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAGCGTGGGATGAGCTTGCAATCAATAATTGAGAAAGAGAGAAGTATACTGAAATCCAAGATGCTTGAGTTTGAGAAACTACTTTCTGAACCTTACCAAAAACCAATAAATTCTTCTCTTGACGGTCAAAGACCCCAATCCATGGGAGCCAATACAAATCCGTCAGGAACATCTCAAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCAATGAACATGGGTTTTGGAAGGCCATCTACACCACCAACAAACACTCTGGCACAGCCTAGTTTCTTTGGAATTGGAGGAAACCTAAACAGCAGTGGCTCCTTCGGTGTTCAAAGCAACCCCCATTCTACACCAGTGGATTTGACAATATTTCCGGGTTCAACTCAGCAAACACCAGCCACATTCAATAACTCCGGTTTTCAAACAACATCAGATGTCCTGTTGTCAAATAAGTTACAACCGGAAAACGTGACAGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCTAGGAGAGATTCCAGAAGAAGCTCCTCCTGATTCATTCGTACGGTAG 1098 0.4308 MRDICRNFQRGSCQYGERCRYLHVNNQQRKPNVQGFGGQNGSHQQKSTNPFGFGSGSGSGFGSQQQQKSNPFGFGTQNSSQLNGGPRSEYKPNQYKPFENKWNRQSSKPQNGGKSDNNPQPVDHKCTDPENCKRQIAEDFEKEKPIWILTCYSHCKGAPCDIVGDISFEELRASAYEDAKRGMSLQSIIEKERSILKSKMLEFEKLLSEPYQKPINSSLDGQRPQSMGANTNPSGTSQSNGPLSVSSFSQLGTSMNMGFGRPSTPPTNTLAQPSFFGIGGNLNSSGSFGVQSNPHSTPVDLTIFPGSTQQTPATFNNSGFQTTSDVLLSNKLQPENVTGDVSIWLKEKWNLGEIPEEAPPDSFVR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0175 365 MobiDBLite consensus disorder prediction 30 88 - -
Vra2g0175 365 MobiDBLite consensus disorder prediction 98 120 - -
Vra2g0175 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 363 - -
Vra2g0175 365 MobiDBLite consensus disorder prediction 213 247 - -
Vra2g0175 365 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Vra2g0175 365 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Vra2g0175 365 Gene3D - 1 52 - -
Vra2g0175 365 MobiDBLite consensus disorder prediction 30 129 - -
Vra2g0175 365 PANTHER MAKORIN-RELATED 2 363 IPR045072 -
Vra2g0175 365 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Vra2g0175 365 SUPERFAMILY CCCH zinc finger 3 29 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra2g0175 zf-CCCH_4 9.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0175 K14321 - gmx:100814339 555.829