Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0170 ATGGCTGCTGCTGACGACACAAACCCTCCTAAGGATTATTACAAATTGCTGGAGGTTGATTATGATGCAACTGATGAAAATATCAAATTAAATTATCGAAGACTCGCCTTGAAATGGCATCCTGACAAGCACGGAGGTGACAGTGCTGTTACTACAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTCTTGATTATGATTTAACGGGGATATGCGAAATTGAAAAATATAGTTTACAGGAATATCTTGCCAGATTTAAAGGCATGATTCTTACTTGCAATGGACTTGGTATCAATCAAACAGACAGATGGTCACCACAATTGATTGAAAATTTTGAATCCCTTGATAAATAA 375 0.3627 MAAADDTNPPKDYYKLLEVDYDATDENIKLNYRRLALKWHPDKHGGDSAVTTKFQEINEAYNVLSDPAKRLDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGINQTDRWSPQLIENFESLDK* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0170 124 Pfam DnaJ domain 12 74 IPR001623 -
Vra2g0170 124 CDD DnaJ 12 66 IPR001623 -
Vra2g0170 124 SUPERFAMILY Chaperone J-domain 10 97 IPR036869 -
Vra2g0170 124 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 116 - -
Vra2g0170 124 Gene3D DnaJ domain 2 90 IPR036869 -
Vra2g0170 124 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vra2g0170 124 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vra2g0170 124 PRINTS DnaJ domain signature 49 69 IPR001623 -
Vra2g0170 124 PRINTS DnaJ domain signature 69 88 IPR001623 -
Vra2g0170 124 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Vra2g0170 124 PANTHER DNAJ PROTEIN-LIKE 4 116 - -
Vra2g0170 124 SMART dnaj_3 11 69 IPR001623 -
Vra2g0170 124 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0170 Vra-Chr2 1317908 1321761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0170 3 74 C2H2 Transcription Factor Family AT1G74250 37.662 1.10e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0170 2 1317908 1321761 Vra2g0170 2 1317908 1321761 ECH