Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0169 ATGTCAAGAACCTCGCAGGTTGTAACATGCAAAGCTGCAATATGCTGGGGGTTAGGGCAACCTGTTACAGTGGAAGAGATACAAGTTGACCCACCAAAAGCAACTGAAGTTCGAGTTAAGATGATTCGTTCCAGTTTATGCCACACAGACATAACAAGCATTCAAGGATTCCCACATATGAAATTTCCTCGAGCACTTGGGCACGAAGGAGTTGGTGTGGTGGAGAGCGTTGGTGACCAAGTGACAACCCTTAAAGAGGGCGATGTGGTGATCCCGACATACATAGGCGAGTGTGAAACATGTGAGAATTGTGTCTCCGGACAAACCAATCTATGTCTGACACACCCTGTGAGTTTAACTGGTTTACTACCAGATGACACTTCAAGGATGTCCGTTAGAGGACAGAGGCTATACCATGTTCTAAGTTGTGCTACATGGTCAGAATACATGGTTAGTGATGTCAATTACGTTCTCAAAGTCGATCCAACCATCGATCCATCCCATGCCAGTTTCATCTCATGCGGGTTTTCAACTGGATTTGGAGCTGCTTGGAAAGAAGCCAAGGTTGAAAGTGGGTCCAGTGTAGCTGTTTTGGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGCGGAGCCAAATTTATGGGAGCAGCTAAGATAATTGGAATTGACAAAAACGAGAAGAAGAGGGAAAAAGGAGAGGCTTTTGGAATGACCCACTTCATAAATCCTACTGATTCTGCTAAATCTGTTTCAGATTTGGTTAAGGAAGCAACTGGTGGAATGGGTGTGGATTATTCCCTTGAGTGCACCGGAATTCCTCCTTTGCTTACTGAATCATTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATGGTGGTTGGAATACCAGCAGAACCTACTGTTCCTTTGGGTATAATAACCATTCTTTTGGGCAGAACTTTGAAAGGTTCAGTTTTGGGGGGCTTAAAAGTTAGATCTGATCTGTCCATAATTGCTGACAAATGCCAGAAAAAGGAATTCCCTCTTGAAGAACTATTCAGCCATGAGGTCTCATTGGAAGATATTAAGGAAGCATTCGAGATAGTGAAGAAGCCCAATTGTCTGAAAATTGTCATCAAGATGTCACATTGA 1131 0.4359 MSRTSQVVTCKAAICWGLGQPVTVEEIQVDPPKATEVRVKMIRSSLCHTDITSIQGFPHMKFPRALGHEGVGVVESVGDQVTTLKEGDVVIPTYIGECETCENCVSGQTNLCLTHPVSLTGLLPDDTSRMSVRGQRLYHVLSCATWSEYMVSDVNYVLKVDPTIDPSHASFISCGFSTGFGAAWKEAKVESGSSVAVLGLGAVGLGAISGAKFMGAAKIIGIDKNEKKREKGEAFGMTHFINPTDSAKSVSDLVKEATGGMGVDYSLECTGIPPLLTESLEATKVGTGKTMVVGIPAEPTVPLGIITILLGRTLKGSVLGGLKVRSDLSIIADKCQKKEFPLEELFSHEVSLEDIKEAFEIVKKPNCLKIVIKMSH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0169 376 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Vra2g0169 376 Gene3D - 14 369 - -
Vra2g0169 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Vra2g0169 376 SUPERFAMILY GroES-like 5 190 IPR011032 -
Vra2g0169 376 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Vra2g0169 376 Gene3D - 179 317 - -
Vra2g0169 376 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Vra2g0169 376 CDD liver_alcohol_DH_like 8 373 - -
Vra2g0169 376 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Vra2g0169 376 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Vra2g0169 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 336 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0169 Vra-Chr2 1308303 1310553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0169 35 323 Monolignol Biosynthesis Gene Families AT2G21730 30.508 3.08e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0169 K00121 - gmx:100798341 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0169 2 1308303 1310553 Vra2g0169 2 1308303 1310553 ECH