Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0168 ATGGTATCCCTCAAATCTGGAAACAAATTGGACAAATATTCTATGATTCAGAAAGCTGATATGAAACTCGAATCAGGGACTTGTAATGTTTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCTAATGGGGTCAAAGGCCAAAGAATTCTCTGATGAAAACTCTCGCTTAGGGGAGGGTAATCAGTATTGTGAGGATGATGGGTCTTCTCCTGGTAGCAGAGCTTGCGAAAGATTGAAGCATGCTGGCGATGACACCAATCACAAGCCTAGTATTTCTTCAACTCGTGATTCTCGGTCTGAAAATGCTGAGAATGGACAAGCCTTATCTGAGAACCATCAGGATTCTAAGTGTTTTGAAAGTCTTGATGATATCACTTCTAGTATTAGTAGGACCAGTAATGCTAATTTAGCGAGTGATAGGCAACAAATAAATACAGACAGAGTAAATGTATCTAGTAGTTCAACTTTAGTCAGTCACTTAGAGGCAAAAGGATTTGGACACGGGCCATCTGTTGACATGTCTGGTTTGTCAGAATGCTGTATGGAAAATGTAGATTCGTCATTTACCAAAGGGGGAGTACCTATTATTGCTGCTGATGCAAAACCTGTGGCAGATAAGGAAAACCTAAATAATATTACAGCCAAAGTATCAGTGGAAATATGTCCGAAGTCAGAAGCACATATGGGAAATAATGTTGATGTTGCTAAAGACGAAGATCGTAAATATTCAGCCCATGATGGACTGCATGAGAAGGTAGATGAGCTGATTAAATCATCTGGCAGGTCTGAACCTCAATCAGAAGATGAGGGTGATGAATCAGATGTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATGCTGGTCGTGAAGATCTACTTGCCATATGTTGTAGGTGTAGTGATGGTGCAGAGCACACCTACTGCATGAGGGAAATGCTTGTCAAGCTCCCGGAAGGTGATTGGTTGTGTGAAGAATGCAAGTGTGCAGAGGATACAACAAATCGAAGGCTCGTTGTTGAAGGAAAAAAAAAGCTTCATAAAGTTATTTCAGCTTCACAAATTTCTGGCAAAAGACCTTCTCAAAGCATGGAAATAGCTACAGCAGCTAAAAGGCAAGCTCTTGAATCGAGCACAGGATCACCGAAGGCATCAAGTCCAAAGAGAATAGTCTCACTCACACGAGAATCTTCTCTCAAGAGCATGGATAAAGGAAAGATGAAGTCTGGGCAACAGATCCCCAAGCGTAACCACCTTGGTGGCGATAATGTAGACCTTGCACGATCTCTTTCGACTGGCTCTCGAAGTCAAAACCCAAGAAGTACGTTTTTGAAGTCCAATTCATTCAACAACTTCAATTCCAAGCCTAGAATCAAACTTGTCAATGAAGTTGTTCCCCAAAAGCAGAAAGGGGGTGTCGAACATATTTCTAAGAATATTGCAACACCTGCGGGGATGATGAGCAAATCAGTGTCATTCAAATCGTCACACTTGGGGCAGTCAAATACTAATGATTCAAAAGTTAAATCAAGTTTTTCTAAACCTGGAATTGTTCAGGATTTGAAACCATTGAGACATACAAAAGAATCGGGTTCACTTGACAAGAAATTTCAACCTAAGATTGATCGACCTGTCATTTGTTCAACTACGGTTAGTTCTGTTGTTTCCACATCAAAAGGTGATCATATGCTTGCTCCTCATGGTGAAACTGCTAAACCTCATACAGTTAACAACAATCGAGAGTTTAAGGTCAACCAAGATGGAAAAGTACATTCATTATCGAAGTCTATGAATAATACAGGCAGTAGAAGCCCAGAACCCCAAGTTAGTTCAGATAGAACATCAACCAGTGTTGATGAAACTCAACAGGATAGGATGCCTCGACCACAGGAGACTGTTAATCAGGTTGACAGAACCAAAGATAGTTCTAATGATCATGTGAGGTCAGGTGTTACTAATGCTTCAAAGAGTTCATTCTGTCGTAAATGTAAAGATTTTGGCCATGCTACAGAATGTTGCTCGAGTAGTGGTAAGCAGGAATTTGGTCATGAAGCATCAGTCATTACAAGTAGTTCAAAAAAGGATATGCATAAGGGAAATAGATTGAAAGCTGCAATCCAGGCAGCTTTGCGTAGAAGGCCTGAAATACACAAGAAGAAAGAAGGTCCTGATGAAACTAACGAGTTTCCTACATCAAGCACCGGTTTCAAACCTGAAGTCAATTCTCAAATCCAAGTGTTGGTTTCCAACACAATGAAGAATAATATATCTTCTGAAGAAACCAATGTGAAGCAGGAAATTCTTGAGAGTCCTTTGTTTGAAACCTCTAAATATCCATCTGCTAATGATCCGAAGCAACTTAAATTTTGCCAAACTGATCCTTGCTCTCAGCTGAGAAAGTCAGATTTTGCTGCTCTCACTTCTGGAAAGCCTGTAGTGAGAGACTTGTCCAATAATGGCATGGCGATTTCAAGTGTTCTTTCGAAGATGTCAGTGATTCCCGAATATGAGTACATCTGGCAGGGTGTCTTTGAAGTGCATAGAAATGGAAAGCCTGCAGACTTGTATGCTGGAATTCAGGCACATTTATCCGCATGTGCTTCTCCCAAAGTTATCGAGACAGTAAAGAATTTTTTACCTGAAGTTTCCCTAAATGAAGTTTCTCGATTGAGCATATGGCCTTCACAATTTCATCAAAGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGTTACGAGAGACACTACAAGGGTCTATTGGATCACATGGTTAGAAATGATTTGGCACTTAGGGGGACGTTTGATGGTGTTGAACTTCTCATATTTGCATCCAATCAGCTTCCGGAAGATTCACAACGTTGGAATATGTTATTTTTTCTATGGGGTATATTTAGAGGGAGGAGGATCAATCATTCAGATTCCACAAAAAGTGCATGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATTTTCCATCTCTCATCATGACTTTGTCTGAAACTTGGTGTTCACCAAAACGCATAGATGAAGAGTCCATTGGTCAAGGTCACAATAAGCCATGTAGGAATTTTGATAGTAAGGGAACTGTGTTTGGCCAGACACATTTGGAATTGCAAGTAAAGTTAGAGAGACAAGATTCTAGAGTCAACACCAAATCTACATCAGGGATTCAGATCACCGGTACCCAATTGTTTCAAGAAATGAATTCCTCTGGTTCGTCCCTGGGAGATAGTGCACCAGATCATAGACGGTACATACAGTCTAAACCTCCCGAAGCAATGGGAATTGGTGTAAGTAGAAGGATTGTGGAAACAAAAACTAATCCTGATATTTCTGGTAAGCAAGAGACCTCTTTGTCTTCGGAGATTCCTTCTGTCGTTTGCCAAATAGATACTGCAAGTAATATCATTAAGGATAAAATTTTAGAGAGAACAAAATATGATGAGAATCAGCAAAGGCCTAAAAGGAAGCAGTTGGAGAATGATCTAAATATTAATGAGGAGGCAACGTTTCAGGGAGAGCTGGATTTGGAAGGGGCCAACTTTCAGGTACCTACTGATAAAAAAATTAAGAATATTGATCTTTCAGATACAGTTGTGGAGGCTTCTACAGGTAGTTGTCGGAAACGGCCTTTGAATGAGGTAAATGGCAAATTTGAAGACAGAGAAAGTATCAAGAAGCTGCAAACAAGTTTGGGTGGAGCTTTTGGATGTAACGATTCTGCTGGAGCCAGGGTCTCTTTTAGTGGTAGTTTCCCATCACTTGTGAACAATCTTGGTTCCTGTTCTTCAGGGGGCAAAGAAGCTTGCGATGAGAAAATCATCCACGAGGACCTAGGAACGATGGAAAGAACCTTTTTTCCTGTGGATACTCGTAATAAACTTAACTTGGGGATGGTGGTGAACAGAGAGTCACTGAATGGGCCTCGTGAGTACGTGGAACAATTTGAAGTTGGGATTCCAAATTTGGAGCTTGCTTTGGGAGGTGAAACGAAACCGTCACACAAGGGTATGATGCCTTTCTTTGTTGGTGCAGCTGACAAGAAAATCAACCCAGAAAAGACTGCAGATATCGAGCGAGATGATGACAACGTTGCTGCATCTCTTTCCTTGTCACTATCCTTTCCATCATCAAGCAAAGAACACATCAAACCAGTTGCACGAGATGAGCCTTTGCCCGATGCTAAATCACCGTTTCTTCTTTTTGGTAGATTCACGGACAAATAA 4266 0.4076 MVSLKSGNKLDKYSMIQKADMKLESGTCNVCSAPCSSCMHLNRALMGSKAKEFSDENSRLGEGNQYCEDDGSSPGSRACERLKHAGDDTNHKPSISSTRDSRSENAENGQALSENHQDSKCFESLDDITSSISRTSNANLASDRQQINTDRVNVSSSSTLVSHLEAKGFGHGPSVDMSGLSECCMENVDSSFTKGGVPIIAADAKPVADKENLNNITAKVSVEICPKSEAHMGNNVDVAKDEDRKYSAHDGLHEKVDELIKSSGRSEPQSEDEGDESDVVEHDVKVCDICGDAGREDLLAICCRCSDGAEHTYCMREMLVKLPEGDWLCEECKCAEDTTNRRLVVEGKKKLHKVISASQISGKRPSQSMEIATAAKRQALESSTGSPKASSPKRIVSLTRESSLKSMDKGKMKSGQQIPKRNHLGGDNVDLARSLSTGSRSQNPRSTFLKSNSFNNFNSKPRIKLVNEVVPQKQKGGVEHISKNIATPAGMMSKSVSFKSSHLGQSNTNDSKVKSSFSKPGIVQDLKPLRHTKESGSLDKKFQPKIDRPVICSTTVSSVVSTSKGDHMLAPHGETAKPHTVNNNREFKVNQDGKVHSLSKSMNNTGSRSPEPQVSSDRTSTSVDETQQDRMPRPQETVNQVDRTKDSSNDHVRSGVTNASKSSFCRKCKDFGHATECCSSSGKQEFGHEASVITSSSKKDMHKGNRLKAAIQAALRRRPEIHKKKEGPDETNEFPTSSTGFKPEVNSQIQVLVSNTMKNNISSEETNVKQEILESPLFETSKYPSANDPKQLKFCQTDPCSQLRKSDFAALTSGKPVVRDLSNNGMAISSVLSKMSVIPEYEYIWQGVFEVHRNGKPADLYAGIQAHLSACASPKVIETVKNFLPEVSLNEVSRLSIWPSQFHQSGAKEDNIALYFFAKDIESYERHYKGLLDHMVRNDLALRGTFDGVELLIFASNQLPEDSQRWNMLFFLWGIFRGRRINHSDSTKSACIPSLNVMPNEKDFPSLIMTLSETWCSPKRIDEESIGQGHNKPCRNFDSKGTVFGQTHLELQVKLERQDSRVNTKSTSGIQITGTQLFQEMNSSGSSLGDSAPDHRRYIQSKPPEAMGIGVSRRIVETKTNPDISGKQETSLSSEIPSVVCQIDTASNIIKDKILERTKYDENQQRPKRKQLENDLNINEEATFQGELDLEGANFQVPTDKKIKNIDLSDTVVEASTGSCRKRPLNEVNGKFEDRESIKKLQTSLGGAFGCNDSAGARVSFSGSFPSLVNNLGSCSSGGKEACDEKIIHEDLGTMERTFFPVDTRNKLNLGMVVNRESLNGPREYVEQFEVGIPNLELALGGETKPSHKGMMPFFVGAADKKINPEKTADIERDDDNVAASLSLSLSFPSSSKEHIKPVARDEPLPDAKSPFLLFGRFTDK* 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0168 1421 MobiDBLite consensus disorder prediction 359 403 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 499 518 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 99 117 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 432 454 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 55 117 - -
Vra2g0168 1421 PANTHER - 21 1176 - -
Vra2g0168 1421 PANTHER - 1180 1413 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 597 638 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 720 741 - -
Vra2g0168 1421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 344 IPR013083 -
Vra2g0168 1421 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 21 1176 - -
Vra2g0168 1421 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1180 1413 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 597 657 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 260 279 - -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 74 98 - -
Vra2g0168 1421 SUPERFAMILY FYVE/PHD zinc finger 274 337 IPR011011 -
Vra2g0168 1421 MobiDBLite consensus disorder prediction 358 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0168 Vra-Chr2 1297362 1306562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0168 208 371 C2H2 Transcription Factor Family AT3G01460 23.780 1.67e-06 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0168 2 1297362 1306562 Vra11g0137 11 888081 897105 ECH
Vra2g0168 2 1297362 1306562 Vra2g0168 2 1297362 1306562 ECH