Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0166 ATGAACAACAGTGGTGGAGGGACTATGATGGGTTTGAGCAATGGTTACTATGGGAGATCGCCATTCACAGTGTCTCAGTGGGAGGAACTGGAACACCAAGCTTTGATCTTCAAGTACATGCTTGCGGGTCTTCCTGTGCCTCAGAATCTGGTGCTCCCCATTCAGAAGAGCTTCAATTCTATACCACATGCCTTCTTTCATCATCCCACATTGAGTTACTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGGAGATGTAGGAGGACTGATGGAAAAAAATGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCATATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCAATCCTCTTCAACTGTCACAACACTTGATGTCACTGGTGGCAGTGGAAGCAGTAGAACTGTAAACTTCCAAAACCTTCCTGCAAATGCTGTTGGTAATCTCCAGAGTACTGATTCTGTAACTGACCATACCAGTTATCATCTAGATTCCATTCCTTATGCCATCCCAAGTAAAGAATACAGGTATCTTCAAGGACTTAAATCTGAGGGTGGTGAACATATCTTCTTTTCTGAAGCTTCGGGAAGCAGCAAAGTTCTCCAAATGGAGTCACAACAGCTGGAAGACACATGGTCTTTGATGTCTAACAATGTTGCCTCTTTTTCTACGTCAAAATCAAGCAACGATTCCCTGTTGCATAGTGATTACCCTCAAAACTCGTTTTTATCTGGTGAATATGCATCAGAAGAGAACCTGAAGGAGGAGGGTCAGTCTCTTCGACCCTTTTTCAATGAATGGCCAAAAGGCAGGGATTCATGGTCTTGTCTGGAAGATGAGAGATCTAACCAAGCAGCTTTCTCCACAACTCAACTTTCAATATCCATTCCCATGTCTTCTGATATCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAGAATGAGATTCAATTTCGGTAA 1005 0.4488 MNNSGGGTMMGLSNGYYGRSPFTVSQWEELEHQALIFKYMLAGLPVPQNLVLPIQKSFNSIPHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTTLDVTGGSGSSRTVNFQNLPANAVGNLQSTDSVTDHTSYHLDSIPYAIPSKEYRYLQGLKSEGGEHIFFSEASGSSKVLQMESQQLEDTWSLMSNNVASFSTSKSSNDSLLHSDYPQNSFLSGEYASEENLKEEGQSLRPFFNEWPKGRDSWSCLEDERSNQAAFSTTQLSISIPMSSDISATSSQSPHGENEIQFR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0166 334 SMART QLQ_2 20 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra2g0166 334 ProSiteProfiles WRC domain profile. 82 126 IPR014977 -
Vra2g0166 334 PANTHER - 18 320 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vra2g0166 334 ProSiteProfiles QLQ domain profile. 21 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra2g0166 334 MobiDBLite consensus disorder prediction 123 146 - -
Vra2g0166 334 MobiDBLite consensus disorder prediction 114 146 - -
Vra2g0166 334 MobiDBLite consensus disorder prediction 313 334 - -
Vra2g0166 334 PANTHER GROWTH-REGULATING FACTOR 5 18 320 - -
Vra2g0166 334 Pfam WRC 83 125 IPR014977 -
Vra2g0166 334 Pfam QLQ 21 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0166 Vra-Chr2 1281313 1284660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0166 8 125 GRF Transcription Factor Family AT3G13960 58.197 1.47e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vra2g0166 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0166 - - gmx:100787567 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0166 2 1281313 1284660 Vra2g0166 2 1281313 1284660 ECH