Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0144 ATGGCTCCATCTTCTGCCATTGTCACTTCCCGTTTTCATGAATCCATCACTCGCCATGCACTTCGCTCCTATCTCTCTGAGTTCATCTCCACTTTTTTCTACGTCTTTCTCGTCGTTGGCTCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAATCCAACAAGTCTGGTTGTGGTTTCCATTGCAAGTGCTTTTGCTTTGTCTTGTGTTCTGTATAATGCATGGGAGATCTCAGGTGGACACGTCAACCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCACTCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGAGGCATTGTTGTTGGCATGCATGTTCCAACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGCTAGAGGGTCTTCTGACCTTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGATCCTAGGCGTGTTACACTGGGTTCCAATGGCATACTTGTAGTTGGCTTTGTGGCTGGTGCAGGTGTCTTAGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCTGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCCACTATAGCTGGTCTTCTTTATGACAATGTGCTGTTCCGTTCTCTGCCTCCAGCAGCAGGGCTTTCAGAAGGAATTGGGGTGTAA 765 0.4889 MAPSSAIVTSRFHESITRHALRSYLSEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVSIASAFALSCVLYNAWEISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRGIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTVYAARDPRRVTLGSNGILVVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSLPPAAGLSEGIGV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0144 254 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 PANTHER AQUAPORIN TIP5-1-RELATED 7 243 - -
Vra2g0144 254 SUPERFAMILY Aquaporin-like 12 243 IPR023271 -
Vra2g0144 254 PANTHER AQUAPORIN-8 7 243 IPR034294 -
Vra2g0144 254 Pfam Major intrinsic protein 18 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0144 254 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Vra2g0144 254 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0144 Vra-Chr2 1128825 1131297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0144 1 238 Major Intrinsic Protein MIP AT3G47440 63.866 1.98e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0144 K09873 - gmx:100801448 421.394