Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0142 ATGTATATGTCAGGTTCACAGTACCACTTGCAGGGATCGAAAGACTGGGATGAAGATGGCATAAAAATAATCCAACTTCTCAACGAGTGTGCCAGTTTTACTGAATCAGGAAACTTCATTGATGCAGATACTGCACTCTACGATCTCTCTCACCTTGCTTCCCCAGATGGTGATTCAATGCAACGCGTTGCTACTTATTTCACTGAGGCACTAGCACATTGCCAATTGGCAAAAAATCTGCGTGGTGTACCTAAAGTTCTCCGCTTGGTGAGAGCATTATCAACTCCTGAACAACAACTTCTGAATCATCTGTTCTTTGATTTCTACCCCTTCTTAAAGATCGCACACACGATCACAAATCAGACCATTATAGAAGCCATGCAAGGGGAAACAGCGATCAACGTGCTTGATCTCAGTCCATCCAACGCTGATCAGTGGAGTAATCTCATGCAGGGTTTGAGAGAGCATGTAACAAACACACCGTATCTGAAGATTACTGTCACGGCCATACACGAGAAGAAGGAAGTGTTAGAAGAAATGGAGTTGCGTCTGAAAGTTGAAGCTGAAAGGTTGAACTTCCATTTCAAATTCAACGCTGTTGTGAGCAGTTTGGAGAGCCTTGACCCTGAGACATTGCCCATCAAGAAAGGTGAGCCTCTTGCAATTTGCTGCGTGCTTCGGCTTCATTCTCTTCTGGCTGCAAATGATGATGAGATGGTGAAAATGAAGGTTCAGAGGGCTTTTGCTGAGATGCTTATAAATCAAAGTCCTGACTCAGCACTCTCACCTTTTTCTCCATGTCCATCGCAGAAGATGGAGAGTTTTCTGAATGGTCTGTGGCGGCTCCGACCCAAAGTGATGGTGATCACTGAGCAAGAATCAAACGTTAATGGAGGTAGTTTGACAGAGAGGGTGTTCAAAGCTTTGAGCTTTTACTGCACACTGTTTGATTGCTTGGAAGCCTCAGCTTCAAGAACATTAATAGGGAGAAGCCTATTGGAGAAGATGCTTCTTGGTGAAGAGATCAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTGGAAACATGGATTCCAAGGCTTGAATTGGCTGGATTTGGAACGGCAGCTGTTAGTTCCAATGGAATTTGGCTTGCTGAAAAGTTGTTGCAAAGCTATGTGCCTGGTTATCACATGCATCAGAAGAACCAGTTCTTGTTTATTTGTTGGGAGAAAATTCCTCTGTTTTCAATTTCTGCATGGAAGTTTTAG 1269 0.4358 MYMSGSQYHLQGSKDWDEDGIKIIQLLNECASFTESGNFIDADTALYDLSHLASPDGDSMQRVATYFTEALAHCQLAKNLRGVPKVLRLVRALSTPEQQLLNHLFFDFYPFLKIAHTITNQTIIEAMQGETAINVLDLSPSNADQWSNLMQGLREHVTNTPYLKITVTAIHEKKEVLEEMELRLKVEAERLNFHFKFNAVVSSLESLDPETLPIKKGEPLAICCVLRLHSLLAANDDEMVKMKVQRAFAEMLINQSPDSALSPFSPCPSQKMESFLNGLWRLRPKVMVITEQESNVNGGSLTERVFKALSFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGTAAVSSNGIWLAEKLLQSYVPGYHMHQKNQFLFICWEKIPLFSISAWKF* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0142 422 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 5 421 - -
Vra2g0142 422 Pfam GRAS domain family 24 421 IPR005202 -
Vra2g0142 422 ProSiteProfiles GRAS family profile. 14 421 IPR005202 -
Vra2g0142 422 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 421 IPR005202 -
Vra2g0142 422 Coils Coil 170 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0142 Vra-Chr2 1120243 1121511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0142 4 421 GRAS Transcription Factor Family AT1G50420 42.857 3.64e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0142 GRAS 1e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0142 - - vra:106778126 847.04