Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0133 ATGGAAGAGAGCGTAGTTACCTTTGTTTTAGACCATTTAGCTGAGCTTGTGGCACGCGAAGTTAACTTGCTGTATGGCGTGGAGGATAGAGTCCAGTCCCTCCAGTACGAACTTCAAATGATCAAAGAGCTTCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATGTTGTACTGAACCAAATCAGAGATGTGGCCCATTTGGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGAAGAACCATTCTCGGGAGGATGCTCCGTGCCTTTGGCCAAGCAAGGTTGCTCCACCACGTAGCCCACAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACACAACAACAAGGACAAATATGATGCTTTCAAAGAAACCACTAATCAATCCGCAGAAGAAGAGAAGGAGGAGAACGAAAGGTTGCAATCGCAGCTAAAGAAACTGAGAAGAAATGTGGAGGAAGAAGATGTGGTTGGCTTTATCCATGACTCCAAGGATGTCATCAACCTACTCCTGGAAGGTGGTTCAAATCGTAAAGCTGTCTCTATTGTTGGCATGGGAGGATTGGGAAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGCCAGGTGATGAGCCACTTCGATTGTCGTGCGTGGGTTTATGTCTCAAACGAGTGCAGAGTTAAGGATCTTTTGATTGGCCTTTTTAAGCATTTGATCCCAAATTTTGAACAGCAACGTAGAGGCAACAAAAGAGGAAAGAAAAACGTAGGAGACATTAACGACCTTAGTGAGGAGGAACTGAAGAAATTGGTGCGAAGCTGCTTGAAGTGGAAAAGTTATCTTGTGGTGGTAGATGACCTTTGGAAAAAGCAAGATTGGGACGAGGTGCTAGATGCTTTTCCAGACAACAACAGAAACAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGCCATGATGTTCCTCACTATCTTCAATTCCTGAATGAAGAAGAAAGTTGGGAATTGTTTCGCAGGAAAGTGTTTAGGGGTGAAGACTACCCTTCTGATTTAGAGCTTTTGGGGAAGCAGATGGTTCGAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTCTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCACACAGAGAATGGTCTAAAGTGGTGGGTCATGTTAATTGGTATCTCATTCAAGACGAGACCCAAGTGAAGGATATAGTTCTGAAACTCAGCTACGACAACTTGCCAAGGAAACTAAAACCATGTTTTCTCTATCTTGGGTTATTCCCTGAAGACTTTGAAATACCTGTTATTCCATTATTGCAAAACTGGGTAGCAGAGGGCTTTATACAAGATACAGGGAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAAGTAACAAGAGTGAATTTTAATGGAGGTTTGAAGACGTGTCATGTTCATGATCTTCTACGAGATCTCTGCATAGCAGAGAGCAAAGAGGATAAAATGTTTGAAGTTTGCACAAATTATAACATTTTAATCCCTACCAAACCTCGCAGACTGTCCATTCACGGTGACATGGGTCACTACATTTCTTCAAGCAATAATGATCACTCATGTATTCGTTCCTTGTTTTTCTTTGGGCCACGTTATGATGTTCGTAGGAGAGAGTGGAAATGGCTTTTGGACAACTTCAAATTGGTTCGAGTGTTAGAGTTTGGAGCTAGCAAATGCCGAGAGATCCCTTCCAATTTAGGGAATTTCATCCACTTAAGGTACTTGAGAATAAACTCAAAGCATGTTACATTTGTTCCTGATTCAATACTGAACCTTTGGAATCTACAAGCCATAGACCTGGGTATTTGGAAGCAAGACGATCCAATTTCTTTCCCTATTCAAATGTGGAAACTCAAACATTTAAGGCATTTGAATACACAAGGGCCTATCAAGTTGCGAGGAAGATGTTCACCATCCTCATACGAGAAGATGTGGAATCTTCAAACCATCCCTCCCCTTATACTCAATGCGCAAGCAACGTCTCTAATAGAGAAAGGAATATTCCCCAATATTAAGAGTATGGGGTTGGATGTGAAGGGTCATGGTTATGAAGAGTTAATGTTGTCACGGATTAATTGCATTACTGATGAGGGGATGAATAGTTTGGGAAATCACTCCAAACTCAAATTTTTGAGACTTGTGGGAAATCCAGTTTTTGAAGATTCCATTGACCTTAATTGTGTCGGTGGCAGTTTCCCGCAGCTGGAAGTGTTGCAAATGGAATGTTTGAATCTTCAAAAGTGGGAATTAGGCAATGGTGCAATGCGGAGGCTTCATAATGTGATTATCCACGCATGTCAATTATTAGATAATCTCCCGACTGAATTATGTTCTTTGAATAGATTGAGAAAAGTGCATATAACGGACTCTCCTTCAAAACAAATGACTCGTATCTTAGAAATTTTGGAAACAAATAATGGAGTTGAAGTGGTTATAGGAGATTCTTCACCTTGGTATGATGATGTTTATTTCAAACTACATACGACGTTTCTTGCGTAG 2592 0.4174 MEESVVTFVLDHLAELVAREVNLLYGVEDRVQSLQYELQMIKELLNTTKRKKGMEHVVLNQIRDVAHLAEDVIDTFVAKVSIYKRRTILGRMLRAFGQARLLHHVAHKIDKLKTTLNEIHNNKDKYDAFKETTNQSAEEEKEENERLQSQLKKLRRNVEEEDVVGFIHDSKDVINLLLEGGSNRKAVSIVGMGGLGKTTLARKVYNSSQVMSHFDCRAWVYVSNECRVKDLLIGLFKHLIPNFEQQRRGNKRGKKNVGDINDLSEEELKKLVRSCLKWKSYLVVVDDLWKKQDWDEVLDAFPDNNRNSRILITSRLKEVALHAGHDVPHYLQFLNEEESWELFRRKVFRGEDYPSDLELLGKQMVRSCRGLPLSIIVLAGLLANKEKSHREWSKVVGHVNWYLIQDETQVKDIVLKLSYDNLPRKLKPCFLYLGLFPEDFEIPVIPLLQNWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVTRVNFNGGLKTCHVHDLLRDLCIAESKEDKMFEVCTNYNILIPTKPRRLSIHGDMGHYISSSNNDHSCIRSLFFFGPRYDVRRREWKWLLDNFKLVRVLEFGASKCREIPSNLGNFIHLRYLRINSKHVTFVPDSILNLWNLQAIDLGIWKQDDPISFPIQMWKLKHLRHLNTQGPIKLRGRCSPSSYEKMWNLQTIPPLILNAQATSLIEKGIFPNIKSMGLDVKGHGYEELMLSRINCITDEGMNSLGNHSKLKFLRLVGNPVFEDSIDLNCVGGSFPQLEVLQMECLNLQKWELGNGAMRRLHNVIIHACQLLDNLPTELCSLNRLRKVHITDSPSKQMTRILEILETNNGVEVVIGDSSPWYDDVYFKLHTTFLA* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0133 863 Gene3D - 419 509 IPR036388 -
Vra2g0133 863 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vra2g0133 863 SUPERFAMILY L domain-like 498 822 - -
Vra2g0133 863 PANTHER - 43 827 - -
Vra2g0133 863 Gene3D - 333 418 IPR042197 -
Vra2g0133 863 PRINTS Disease resistance protein signature 186 201 - -
Vra2g0133 863 PRINTS Disease resistance protein signature 275 289 - -
Vra2g0133 863 PRINTS Disease resistance protein signature 368 382 - -
Vra2g0133 863 Gene3D Ribonuclease Inhibitor 570 837 IPR032675 -
Vra2g0133 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 433 IPR027417 -
Vra2g0133 863 PANTHER DISEASE RESISTANCE PROTEIN RP 43 827 IPR044974 GO:0006952
Vra2g0133 863 Coils Coil 130 164 - -
Vra2g0133 863 Gene3D - 5 97 - -
Vra2g0133 863 Pfam NB-ARC domain 172 421 IPR002182 GO:0043531
Vra2g0133 863 Gene3D - 143 327 IPR027417 -
Vra2g0133 863 CDD RX-CC_like 3 119 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0133 Vra-Chr2 1038285 1047486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0133 185 436 WRKY Transcription Factor Family AT5G45050 25.882 2.67e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0133 - - vra:106779070 1284.63