Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0131 ATGGCCAAGAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTTTGAGGGATCCCACACAAGATAAGGATAAAAGAAGGAAATGGATATTTGGAAGGCTAAAGAACAAGAGATTACCTTCAATTACAGCTCCACTTCCATCAAAAGAGACAACACTAAGCGAAGCAGAGGAAGAACAAAGCAAGCATGCTTTAACAGTGGCCATTGCCTCAGCAGCAGCTGCTGAAGCTGCTGTTACTGCTGCACATGCTGCTGTTGAGGTTGTTCGCCTCACTGGGGTCTCACAATCTACCCTTATTTGCAAAGAAAAGTCAGAAGAATCTCAACCTCTCAAAACTAGTAATGCTGCTCCTCAGTTCGCACACCAGTGCAAGAGGGACATTCAAGAATCTGCTGCAGTCATCAAAATTCAAACTGCATTTAGGGGTTACCTGGCTAGGAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAACTACAAGCTATCATTCGTGGCAGAGCAGTAAGACGCCAAGCTATGAGTACTCTTAAGTGCTTGCAGTCCATTGTGAGCATCCAATCACAGGTCTGTGCAAGGAGGCTTCAAATGGTTGAAGGGAGATGTGACTACACTGAAAATGAAGAGTTGCATGATTCAAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGTGATGAGAGCACTCCATCGAAGGAAGAGTTAGACAGCTCTTGCATAAGCATGAAAGAAACGGTTCTCAAGAGAGAAAGAATAAAAGAATACTCATTTAACCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTAAATGGAAGATGGAGATACTGGCTAGAGCAGTGGGTAGATACACAACTTTCAAAGAGCAAAGAACTTGAAGATTTAGACTCAGTTTTTAGCTCTCATGCTAGGAGTGGAGACGAATATGGAAGCAGACAACTTAAGGTGAGAAGTATTAACAGGCAAAATACAGTTGAAGGATTGGATTCTCCTACAATGGGTTCAAGAAGATCTTTTCCTCATAGGAGACAGTGTTCTGTGGGAGAAGACCAGTCATTTTCAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACAGAATCAGCCAAAGCAAAAGCAAGATCAACAAGCTCACCAAAAATAAGGACCGGGGGGAACATTGACATGAATTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCAATTGCATCTTCCATTAACAGTGAGGTGCTTAGTGGTGGTAGGATGGCCAAGTTTAGTGGTAACCAGCAAAGATCTCCAAGCTTTAAGGGCCTTTCAGTGCCTATAAAATCAAGCCGAACTATCAAGGATCTCAGTATTAATTCAGATTGTTCACTGCCTAATTGGGGTCCTCAAGGTTCCTTCAAATGA 1401 0.4261 MAKKKSWFSLVKRLFLRDPTQDKDKRRKWIFGRLKNKRLPSITAPLPSKETTLSEAEEEQSKHALTVAIASAAAAEAAVTAAHAAVEVVRLTGVSQSTLICKEKSEESQPLKTSNAAPQFAHQCKRDIQESAAVIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLQMVEGRCDYTENEELHDSKDKIIRMDSNSERKCDESTPSKEELDSSCISMKETVLKRERIKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSHARSGDEYGSRQLKVRSINRQNTVEGLDSPTMGSRRSFPHRRQCSVGEDQSFSSSPATPAYMAATESAKAKARSTSSPKIRTGGNIDMNSDSYSPCKKKLSIASSINSEVLSGGRMAKFSGNQQRSPSFKGLSVPIKSSRTIKDLSINSDCSLPNWGPQGSFK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0131 466 Pfam IQ calmodulin-binding motif 132 151 IPR000048 GO:0005515
Vra2g0131 466 MobiDBLite consensus disorder prediction 347 364 - -
Vra2g0131 466 Gene3D - 129 180 - -
Vra2g0131 466 Pfam Protein of unknown function (DUF4005) 351 432 IPR025064 -
Vra2g0131 466 MobiDBLite consensus disorder prediction 372 394 - -
Vra2g0131 466 PANTHER IQ-DOMAIN 11 5 452 - -
Vra2g0131 466 SMART iq_5 129 151 IPR000048 GO:0005515
Vra2g0131 466 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Vra2g0131 466 MobiDBLite consensus disorder prediction 327 394 - -
Vra2g0131 466 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Vra2g0131 466 PANTHER IQ-DOMAIN 5-RELATED 5 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0131 Vra-Chr2 1027712 1030830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0131 1 466 IQD Protein Family AT5G13460 45.697 4.77e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0131 - - gmx:100800192 738.799