Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0129 ATGGAGAAGTACCTGAGAGAAAACTTCAGCGTCCAGCCGAAGAACCCTTCGGAGTCCGCCCTCCGCCGATGGAGATCCGCCGTCTCCGTCGTCAAAAATCCCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGCCCAACGCGCCGAAGCGGAACACAAGCGTAGAAAGCTCCAGGAAAAAATACGGGTGGCTCTCTATGTTCAAAAAGCAGCGTTGCATTTTATTAGCGCCGGTGATGATCGTGGTTACACGCTCTCAAAAGAGACTCGGGAAGCAGGCTTCGAAATTGAGCCCGACGAATTAGCCTCCATTGTTCGATCCCATGACGAGAAATGTTTAGAACGCTACGAAGGAGTGGAAGGAGTAGCAAGGGTTGTTCGTGTGTCCTTGCAAGAGGGCGTTATTTCGGTAGATGTTGAGCACAGACAAAATATCTATGGTTGTAACCGGCATGCCGAGAAGCCCCCTAGAAGCTTTTGGATGTTCGTGTGGGATGCAATGCAGGACTTAACTCTAATCATCCTTATGGTATGTTCATTCGTTTCAGTTGGTGTTGGAACTGTAACCGAAGGTTGGCCAAAAGGTATGTACGATGGAGTGGGAATCATACTATCTATACTTTTGGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTAAGGACTTGGATAAAGAAAAGAAAAATGTCAGCATTCAAGTTACAAGAGACGGTAGAAGGCAAAAAGTTTCAATTCATGATATAGTGGTAGGAGACATGGTCCATCTTTCAATAGGAGACGTAGTTCCTGCAGATGGGTTATTGATATCTGGTTTTGGCTTATTAATAGACGAATCAAGTCTATCANGTGANAGCGACGCCGTAAATGTTGATAATCAGAAGCCTTTTCTTCTTGCTGGGACCACAGTGCAAGATGGGTCTGCAAAGATGTTGGTCACGTCCGTTGGTGTTAGGACAGAATGGGGAAGATTGATGGATACTCTGAACGAAGGAGGAGATGATGAGACGCCACTTCAGGTCAAACTAAATGGAGTTGCTACCATTATTGGTAAGATAGGCTTGGGTTTTGCCCTTCTCACGTTCATAGTTCTGACGGGCAGATTTTTGTTGGGGAAAATAGCTCACCATGAAATCACAAAATGGTCCCTAAATGATGCATCCAAGCTTCTCAATTTCTTTGCCACCGCCGTCATTATTATAGTTGTGGCAGTTCCCGAGGGGCTTCCTTTGGCAGTCACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTGGTCAGGCATCTCTCCGCATGCGAGACCATGGGTTCAGCAAGTTGTATTTGCACTGATAAAACGGGAACTTTGACTACAAATCACATGGTTGTAGACAAAATATGGATTTGTGGACAAACTAAGGCCGTTAAAAGCGACCACAGTGAAAATTTGTTGAAGCCCTTAATTTCTGAACAAACATTTGATCTTCTTTTGCAATCCATATTCCAGAATACTGGCTCAGAGATAGTCAAAGGGCTAGATGGAAAGAACAAGATCATGGGTACCCCCACAGAATCCGCTTTGTTGGAATTTGGCTTGCTTTTGGGAGGTGATTCCAAGTTTTACAACGACAAGTATAAAATAGTGAAGGTTGAACCTTTCAATTCAACCAGAAAAAAGATGTCAGTGCTGGTGTCTCTTCCCGGTGGCACCAACAAGTATCGAGCATTTTGCAAAGGAGCATCAGAATTGGTTGTGAAAATGTGCGACAAAGTTGTCGACACAGACGGCAAAGTGGTCCTTTTGAACGAACAACAAAGGAGTAACATCACAGAAGTTATCAACGGCTTTGCTTCTGATGCTCTGAGAACACTCTGCATTGCCTTCAACGATATTGAAGGATCTTCTGAACGCGGTCGTATTCCTGAGGACAAATACACGTTGATATCTATTGTTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAAGAAGCTGTCAAGACTTGTTTAGAAGCTGGCATTGTCGTTAGAATGGTGACTGGTGACAACATAAACACTGCCAAAGCAATAGCTAGAGAATGCGGCATATTGACAGATGGAATTGCGATAGAGGGACCAGATTTCCGGAACAAGTCCCAGCAAGAACTGGAAAAGATAATACCGAAAATACAGGTAATGGCCCGATCCTTGCCCCTTGACAAGCACAAATTAGTGACCCATTTGAGGGAGGATTTTAACGAGGTTGTCGCAGTAACTGGCGATGGGACCAATGATGCCCCAGCGTTGCATGAAGCTGATATTGGACTTGCCATGGGCATTGCAGGGACAGAGGTTGCCAAAGAGAACGCGGATGTGATTGTAATGGACGATAACTTCTCAACCATAGTGAAGGTTACCAGATGGGGGCGTTCTGTGTATATTAATATACAAAAGTTTGTTCAGTTCCAGTTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTCGTTTCAGCCTGCGTGTCAGGCTCTGCTCCTCTCAGTGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTCGGCGCGTTGGCACTGGCTACAGAACCTCCTCATGATGGGCTGATGAAGAGGCCCCCTATAGGAAAAAACGCAAAATTCATCACCAGGATCATGTGGAGGAACATCATCGGTCAGAGCATCTACCAAATTATGGTCCTTTTGGTTCTCAAATTTCGTGGCAAACAGATTCTCAAGCTCGATGAACACGACGATACTACCTTGCTTCTGAACACAGTCATATTCAACAGCTTCGTATTCTGTCAGGTGTTCAACGAGATAAACAGCCGTGACATGGAGAAGATCAATGTTTTTGAAGGCATGATAAGCAGCTGGGTGTTCCTTATAGTGATGGGCATAACGATATGCTCTCAAGCCTTGATAGTTGAATATCTTGGTGCTTTTGCCCAAACCGTACCGCTCAGCCGGGAACTGTGGTTTGTAAGCGTCATGATTGGTGCGGTGAGTTTAGTCGTAGCTGTTCTCCTCAAGTGCATTCCGGTACCATCCAGCACCTACGTCGCCGCCGCCACCCACCATGACGGTTACGAACAGCTCCCCACTGGTCCTGATCTCGCTTGA 3120 0.4545 MEKYLRENFSVQPKNPSESALRRWRSAVSVVKNPRRRFRMVANLAQRAEAEHKRRKLQEKIRVALYVQKAALHFISAGDDRGYTLSKETREAGFEIEPDELASIVRSHDEKCLERYEGVEGVARVVRVSLQEGVISVDVEHRQNIYGCNRHAEKPPRSFWMFVWDAMQDLTLIILMVCSFVSVGVGTVTEGWPKGMYDGVGIILSILLVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTRDGRRQKVSIHDIVVGDMVHLSIGDVVPADGLLISGFGLLIDESSLSXXSDAVNVDNQKPFLLAGTTVQDGSAKMLVTSVGVRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFIVLTGRFLLGKIAHHEITKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICGQTKAVKSDHSENLLKPLISEQTFDLLLQSIFQNTGSEIVKGLDGKNKIMGTPTESALLEFGLLLGGDSKFYNDKYKIVKVEPFNSTRKKMSVLVSLPGGTNKYRAFCKGASELVVKMCDKVVDTDGKVVLLNEQQRSNITEVINGFASDALRTLCIAFNDIEGSSERGRIPEDKYTLISIVGIKDPVRPGVKEAVKTCLEAGIVVRMVTGDNINTAKAIARECGILTDGIAIEGPDFRNKSQQELEKIIPKIQVMARSLPLDKHKLVTHLREDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFSTIVKVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLSAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGKNAKFITRIMWRNIIGQSIYQIMVLLVLKFRGKQILKLDEHDDTTLLLNTVIFNSFVFCQVFNEINSRDMEKINVFEGMISSWVFLIVMGITICSQALIVEYLGAFAQTVPLSRELWFVSVMIGAVSLVVAVLLKCIPVPSSTYVAAATHHDGYEQLPTGPDLA* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0129 1039 SFLD p-type atpase 432 804 IPR044492 -
Vra2g0129 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Vra2g0129 1039 Pfam E1-E2 ATPase 235 428 - -
Vra2g0129 1039 Coils Coil 40 60 - -
Vra2g0129 1039 Gene3D - 447 797 IPR023214 -
Vra2g0129 1039 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Vra2g0129 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1013 IPR023298 -
Vra2g0129 1039 CDD P-type_ATPase_Ca_PMCA-like 139 885 - -
Vra2g0129 1039 SFLD C1.7: P-type atpase like 432 804 - -
Vra2g0129 1039 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 662 IPR023299 GO:0000166
Vra2g0129 1039 Gene3D - 165 1012 - -
Vra2g0129 1039 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Vra2g0129 1039 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Vra2g0129 1039 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Vra2g0129 1039 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Vra2g0129 1039 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Vra2g0129 1039 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Vra2g0129 1039 Pfam haloacid dehalogenase-like hydrolase 448 766 - -
Vra2g0129 1039 Gene3D - 460 657 IPR023299 GO:0000166
Vra2g0129 1039 SUPERFAMILY HAD-like 449 857 IPR036412 -
Vra2g0129 1039 SMART Cation_ATPase_N_a_2 115 187 IPR004014 -
Vra2g0129 1039 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 107 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra2g0129 1039 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra2g0129 1039 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra2g0129 1039 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra2g0129 1039 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1022 - -
Vra2g0129 1039 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Vra2g0129 1039 Gene3D - 133 333 - -
Vra2g0129 1039 PANTHER CATION TRANSPORTING ATPASE 3 1022 - -
Vra2g0129 1039 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Vra2g0129 1039 Pfam Cation transporting ATPase, C-terminus 837 1011 IPR006068 -
Vra2g0129 1039 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 835 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra2g0129 1039 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra2g0129 1039 Gene3D - 16 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0129 Vra-Chr2 1010364 1015866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0129 57 1036 Primary Pumps ATPases AT3G57330 68.603 0.0 1373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0129 K01537 - gmx:100805063 1769.59