Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0121 ATGGGGTATCTGTACCTTTCTTGCAGAGCCGAATCTGCAGTTTCAACTTCTGATTCGGTGGCTTCTTCCAAAGCTACCGGAGAGAAAGAGAAAGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGTGACCTCGAGGCTGCTACCAATGGCTTCTCGGACCGCAAGCTTCTCGGCAAAGGGAGTCACGGGTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCTGTGGCGGTGAAGCGGCCGTCGCGGCCGCATCATCACGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCGCTGGAGATCACCAACGAGGTGGACAATGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACTCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAAGAGGATTCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCCGTGATTCACCGTGACATTAAGTCTGCGAACGTTCTCATCGACCGAAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCCTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCCCCTGCAGGCACCATGGGCTATCTTGACCCTTGTTATGTAACTCCTGATAATTTGAGCACAAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCGATTGACATCACTTATTCACCACCTTCTATCGTGGACTGGGCTATTCCCCTCATCAAGAAGGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCCAAGGATCCGGTTGTGAGGAAGCAGTTGGCTGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAATGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGACCCGTCGAAGCAAGAAATGGTGAAATAAATTCTAGGCTGGCAGGTGTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAATCTGCAATGAGGTATTCCCGGAGGGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTGAGAGATGCTGATGGGATGGAGCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAGGCCATGTGGCAGTGACAAGGACGCNTANGGCTTCAGTAAAAGCCAGATTGTAGGTCAGACTGAGACCACTTCAAAACAGGACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTCTCTGGTTGCCGAGGTTGTCTAG 1506 0.498 MGYLYLSCRAESAVSTSDSVASSKATGEKEKERSGIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVPRPVSSSAPLEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGKRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMNEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGEINSRLAGVEEGNIEALDGRLSKSAMRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDADGMEHSSKSAEQVSSSRFGSGRYSIRGRNLYRPCGSDKDAXGFSKSQIVGQTETTSKQDEVSGSNSKNLNSLVAEVV* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0121 501 Gene3D Transferase(Phosphotransferase) domain 1 142 340 - -
Vra2g0121 501 SUPERFAMILY Protein kinase-like (PK-like) 35 332 IPR011009 -
Vra2g0121 501 PANTHER OS01G0750732 PROTEIN 1 483 - -
Vra2g0121 501 Gene3D Phosphorylase Kinase; domain 1 23 141 - -
Vra2g0121 501 MobiDBLite consensus disorder prediction 419 444 - -
Vra2g0121 501 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN 1 483 - -
Vra2g0121 501 ProSiteProfiles Protein kinase domain profile. 53 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0121 501 MobiDBLite consensus disorder prediction 469 494 - -
Vra2g0121 501 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Vra2g0121 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vra2g0121 501 SMART serkin_6 53 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0121 501 Pfam Protein kinase domain 54 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0121 501 MobiDBLite consensus disorder prediction 460 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0121 Vra-Chr2 946176 948377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0121 41 332 Receptor kinase-like Gene Family AT3G59420 45.302 8.70e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra2g0121 Pkinase 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0121 - - gmx:100819674 865.529