Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0118 ATGGAAGAGAGTGTAGTTTCCTTTGTTTTAGATCACTTAGCCCAGCTTGTCGCAAGCGAAGTTAACTTGCTGTATGGGGTGGAGGATAGAGTCCAGTCCCTCCAGAGAGAACTTGAAATGATCAAAGAGCTCCTCAATACCACAAGGAGAGAGAAGGGAATGGAACATATAGTACTGAACCATATCAGAGATATGGCCTACTTAGCTGAGGATGTAATCGACACTTTCGTAGCAAAAGTTTTAATTTACAAAAGGAGAACCATTCTCGGGAGGATGCTCCATGGCTTTGGCCAAGCAAGGTTGCTCCACCGCTTATCCGACAAAATAGACTATATCAAAACCATTCTCAAGGAAATACGCGACAACAAAGACACATATGATGCTTTCAGAGAAACCACTAATGAATCCGCAGCAGAAGAGGTGAGGGAAAGGTTGGAATGGCTGCAGAGGCTAAGAAGAGATGTGGAGGTAAAAGATGTGGTTGGCTTTGTCCATGACTCTGAGGTTGTCGTCAAGCGACTCCTGGGAGATAGTTCAAATCGTAAAGTCGTCTCTATCGTTGGCATGGGGGGATTGGGAAAGACCACCCTTGCCCGAAAGGTCTTTAATAACAGCCAGGTGAAGCACCACTTCTATTGTCACGCGTGGGTTTATGTCTCGAACGAGTGCAGAGTTAGGGAGCTTTTGCTTGGCCTTCTTAAACAGTTGATGCCAAATTTTGAACAACAATGCGAAGGCATTAAAAGCCCGAATGAGGAAGAGCTAAAAAATATGGTGGAGAACTGCTTGGAGGGGAAAAGGTATCTTGTGGTGGTAGACGACTTGTGGAAAATAGAGGATTGGGATAAGGTGAAAGGTGCTTTTCCAGACAACAACAGAGGCAGCAGAATATTGATTACTAGTCGTTCGAGAGAGGTGGCCACGCATGCTGGTCTTGATATTCCTCACTATCTTCCATTTCTCAATGAAGGAGAAAGTTGGGAGTTGTTTCGTAAAAAAGTGTTTATCGATGGAGATTGCCCTTCTGATTTGGAGCCTCTGGGAAAGCAGATGGTTGAAAGATGTTGTGGTTTGCCGCTCTCCATCGTTGTTTTGGCTGGACTGTTGGCCAATAAGGAAAAGTCACATACACTATGGTCTAAAGTGGTCGATCATGTTAATTCGTATATCAATCAAGATAAGACCCAAGTGAATGATATAGTTCTCAAGCTCAGTTATGACAATTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAGGACTTTGAAATACCTGTTGCGTCATTATTGCAAAAATGGGTTGCAGAGGGTTTTATACAAGATACAGGAGATAAAGACCCAGATGATATTGCAGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTAACAAGAGTGAAGTTAAATGGAAGTTTGGAGAAGTGTCAAGTTCATGATCTTCTTCGAGATCTTTGCATATCGCAGAGCAAAAAGGACAAAGTGTTTGAAGTTTGCACAAACAATAACATTGTAGATTCTACCAAACCTCGCAAACTGGCCATTCAGAGTGACATGCGTGACTACATTTCTTCAAGCAAAAGAGACCATTCATGTGTCCGTTCCGTGTTTTTCTTTGGGACAAATTATGATGAGTGGAAATGGCCTTTGGACAACTTCAAATTGGTTCGAGTGTTAGAGTTTGGACCTACCACTCGCCTAGAGATCCCTTCCAATCTGGGGAACTTCATTCACTTAAGGTACTTGAGAATTGACTCTTTGTTTCCTAAATTTGTTCCAGATTCAATACTTAACCTTTGGAATCTACAAACCATAGACCTGGGTATTTTCAAGAATGGGCTTCAAGTTTCTTTCCCTGCTCAAATGTGGAAACTTAAATATTTAAGACACTGGAATTCATCAGGGCCCATCGAGTTGCGAGGAAGATGTTTACAATCAGTTGAGAAGATGTGGAATCTTCAAACCATGTCTCCCCTTACACTCAATAAGCAAGCAATATCTCTAATAAGGAATGGAACATTTCCCAATATTAAGAGGATGGGGTTGAAAGGGAGTCATGATTGTAAAGATGAATTACCCAATTTACTGGAGAACCTAACACAATTAAAGCATTTGAATACATTAGTGATTTTTCCCGAAGGTTTGCTTGATTTCAAGCCCCAAGAACTGGTTCAAAGGTTAGGACAATTCAATCGTCTAACTATTTTAGTAATTGATTGTGTTAATCTTCTAACCTCTGAGCTCATATTTCCCCCAAACATTATAGAGTTAACTTTGTCAGTGATTAAACGCATTAGTGATGAGGGGATGAATGGTGTGGGAAATCACTCCAAACTCAAGATTTTAACACTTTTGGGATATATAATGGAGTTTAAGGATCCCTTTAACCTCAATTGTGTCGGCTTCCCAAAGTTGGAAGTGTTGCAATTGAAATACTTGCCACTTCGAAATTGGAAATTAAGCAATGGTGCAATGCAGAAGCTTCAACATGTAATTATCTACTGTTGTGAACCATTGGATAATCTCCCAATTGAACTCTGTTCTTTGAATGGATTGAAAAAAATGCATATACAAGACTATAGGACAAAAGTGATTGAACAAATGGTGACATCTTACGAATATTGGAAACAAATAATAGAGTTGAAGTCCTTAGAGAATATGCTTCACCTTGGGCTGATGCATTAG 2706 0.4065 MEESVVSFVLDHLAQLVASEVNLLYGVEDRVQSLQRELEMIKELLNTTRREKGMEHIVLNHIRDMAYLAEDVIDTFVAKVLIYKRRTILGRMLHGFGQARLLHRLSDKIDYIKTILKEIRDNKDTYDAFRETTNESAAEEVRERLEWLQRLRRDVEVKDVVGFVHDSEVVVKRLLGDSSNRKVVSIVGMGGLGKTTLARKVFNNSQVKHHFYCHAWVYVSNECRVRELLLGLLKQLMPNFEQQCEGIKSPNEEELKNMVENCLEGKRYLVVVDDLWKIEDWDKVKGAFPDNNRGSRILITSRSREVATHAGLDIPHYLPFLNEGESWELFRKKVFIDGDCPSDLEPLGKQMVERCCGLPLSIVVLAGLLANKEKSHTLWSKVVDHVNSYINQDKTQVNDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVASLLQKWVAEGFIQDTGDKDPDDIAEDYLYELIDRSLVQVTRVKLNGSLEKCQVHDLLRDLCISQSKKDKVFEVCTNNNIVDSTKPRKLAIQSDMRDYISSSKRDHSCVRSVFFFGTNYDEWKWPLDNFKLVRVLEFGPTTRLEIPSNLGNFIHLRYLRIDSLFPKFVPDSILNLWNLQTIDLGIFKNGLQVSFPAQMWKLKYLRHWNSSGPIELRGRCLQSVEKMWNLQTMSPLTLNKQAISLIRNGTFPNIKRMGLKGSHDCKDELPNLLENLTQLKHLNTLVIFPEGLLDFKPQELVQRLGQFNRLTILVIDCVNLLTSELIFPPNIIELTLSVIKRISDEGMNGVGNHSKLKILTLLGYIMEFKDPFNLNCVGFPKLEVLQLKYLPLRNWKLSNGAMQKLQHVIIYCCEPLDNLPIELCSLNGLKKMHIQDYRTKVIEQMVTSYEYWKQIIELKSLENMLHLGLMH* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0118 901 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vra2g0118 901 Gene3D Ribonuclease Inhibitor 522 898 IPR032675 -
Vra2g0118 901 Pfam NB-ARC domain 168 408 IPR002182 GO:0043531
Vra2g0118 901 Gene3D - 406 497 IPR036388 -
Vra2g0118 901 CDD RX-CC_like 3 121 IPR038005 -
Vra2g0118 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 420 IPR027417 -
Vra2g0118 901 Coils Coil 138 158 - -
Vra2g0118 901 Coils Coil 24 51 - -
Vra2g0118 901 PRINTS Disease resistance protein signature 183 198 - -
Vra2g0118 901 PRINTS Disease resistance protein signature 262 276 - -
Vra2g0118 901 PRINTS Disease resistance protein signature 355 369 - -
Vra2g0118 901 PANTHER DISEASE RESISTANCE PROTEIN RP 46 864 IPR044974 GO:0006952
Vra2g0118 901 Gene3D - 5 94 - -
Vra2g0118 901 PANTHER - 46 864 - -
Vra2g0118 901 Gene3D - 320 405 IPR042197 -
Vra2g0118 901 Gene3D - 145 313 IPR027417 -
Vra2g0118 901 SUPERFAMILY L domain-like 484 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0118 Vra-Chr2 923658 926628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0118 182 492 WRKY Transcription Factor Family AT5G45050 23.151 6.59e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0118 - - vra:106779070 1165.98