Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0101 ATGGGCAAAGCAAGCGCTTCTTCTGTCCTTCTTCTATCCCTTCTCACTCTTTCATTCTTTGTGCCTAAAACCTCTGCAAACAAGCAACTTCAAACTCTTAACAAACTCCAAAAGTCCATGTTTTTCCGAGGAATTTCACAAACTGATAGGACTGAGTTTGAGGTTGAAGAGGTTGTTCTCGATGGCATTGTCGATTCTCAAAAGGGTCTCAAAGAAAACGACAGAATTGGAAGACTCCCAGGGCAACCGCAAGTCAGTTTTTCTCAGTATGGAGGCTATGTAACTGTCGACAAAGTTGCTGGTCGTGCCTTCTACTATTACTTTGTCGAAGCTCAACGTTCTAAACACACACTCCCTCTTCTTCTTTGGCTCAATGGAGGCCCGGGATGTTCTTCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTTAGAGTAAACAGTGATGGAAAAACACTACACACAAATGCATTTTCATGGAACAGAGTTGCTAATGTTCTGTTCCTGGAGTCACCTGCTGGAGTAGGGTTTTCATACTCAAATAAATCAACAGATTATGCTGCAAATGGAGATAAGAAAACAGCTGCAGATAATTATTTATTCTTGGTGAATTGGTTAGAGAGATTTCCTGAGTATAAAAACAGAGATTTCTTCATTGCTGGAGAGAGCTATGCTGGGCATTATGTGCCACAACTTGCACATACCATTCTCCATCATAACAAAAAGGCAAATAAAGCAATCATCAACTTCAAAGGAATCTTGATTGGAAATGCAGTGATCAACGAAGAAACTGATTCGTCAGGACTGTACGATTTTCTTGCTAGCCATGCAATAATCTCAGATGAAGCAGCTTATATCAGTAAAGCTTGTGAGTCCTCATCAAAGATTGCGAGCAGTCAGTGCGATGCAGCAGAAACACAAGTTGATAGCAATATTGAATATATTGACTTATATAACATATATGCTCCACTCTGCAATAGTACAAAACTCACACCACGGCCAAAAAGATATTCTATTGTCACTGATCCATGTAGTGAGTATTATGTGCATGCGTATATTAATAGAAAAGATGTTCAAGAGGCTCTTCATGCCAATGTCACCAATCTCAAATATGACTGGGAACCCTGCAGCGAAGTCATTACCAAGTGGGTAGATAGTGCTTCAACAGTTCTTCCAATCTTACACGAATTACTCAACAATGGCCTCAGGGTTTGGATTTTCAGTGGTGACACAGATGGAAGGGTGCCTATTACTTCAACCAAGTATTCGGTGAAGAAGATGGAGCTTCCCGTTGAGAAAGTTTGGCATCCTTGGTTTTCCCATGGAGAGGTTGGTGGGTTTGCAGAAGTATATAAGGGAGGCCTAACATTAGCTACGGTGAGAGAAGCAGGGCATCAAGTGCCAAGTTACCAACCCGCAAGAGCCCTAACTTTGATCAAATATTTCTTAGACGGCACTCCTCTGCCTGGTCCTCCCAAAAGACATACCTAG 1491 0.4178 MGKASASSVLLLSLLTLSFFVPKTSANKQLQTLNKLQKSMFFRGISQTDRTEFEVEEVVLDGIVDSQKGLKENDRIGRLPGQPQVSFSQYGGYVTVDKVAGRAFYYYFVEAQRSKHTLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHTNAFSWNRVANVLFLESPAGVGFSYSNKSTDYAANGDKKTAADNYLFLVNWLERFPEYKNRDFFIAGESYAGHYVPQLAHTILHHNKKANKAIINFKGILIGNAVINEETDSSGLYDFLASHAIISDEAAYISKACESSSKIASSQCDAAETQVDSNIEYIDLYNIYAPLCNSTKLTPRPKRYSIVTDPCSEYYVHAYINRKDVQEALHANVTNLKYDWEPCSEVITKWVDSASTVLPILHELLNNGLRVWIFSGDTDGRVPITSTKYSVKKMELPVEKVWHPWFSHGEVGGFAEVYKGGLTLATVREAGHQVPSYQPARALTLIKYFLDGTPLPGPPKRHT* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0101 496 Pfam Serine carboxypeptidase 80 484 IPR001563 GO:0004185|GO:0006508
Vra2g0101 496 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Vra2g0101 496 Gene3D - 344 381 - -
Vra2g0101 496 Gene3D - 390 485 - -
Vra2g0101 496 SUPERFAMILY alpha/beta-Hydrolases 70 490 IPR029058 -
Vra2g0101 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 488 IPR001563 GO:0004185|GO:0006508
Vra2g0101 496 Gene3D alpha/beta hydrolase 70 327 IPR029058 -
Vra2g0101 496 PANTHER CARBOXYPEPTIDASE 10 488 - -
Vra2g0101 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 168 IPR001563 GO:0004185|GO:0006508
Vra2g0101 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 179 IPR001563 GO:0004185|GO:0006508
Vra2g0101 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Vra2g0101 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0101 Vra-Chr2 804283 811027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0101 352 488 Calmodulin-binding Proteins AT2G22960 27.737 6.03e-14 68.6