Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0084 ATGGCGAAAATTTCTTTGGAGAAGAAGATTTTCTGTGAATATCCATCAAATCTCAGAGTTCTTGCCATTGACACTGACCTTACAGTTCTTGAGTTCATCAAGAAAGTATGTAATGAATATTGCTATGAAGTTATCACATGCACGGAATCGCTACATGCCACTATAATTTTGCAGGAAAAAAGGTCGACCATTGATTTGGTTCTGATGGAAGTTCATATGCCAAAGATGGATGGCTATGAATTCTTGCTTACCACCCAAGAAATCGATGTTCCGAAAATCATGATGTCTTTCGATGATAGCAAGAAATCTGTGATGAAGACTATCAAGCTTGGAGCTTGCGATTATATGATTAAGCCTTTGCATGAGGATCGACTGAGAAACATGTGGACACATGTTGTTAGAAAATCAATGAATGAGAATAAGATGAGAAAAAAGATTGGTAATAGCTTGGAAGATGATAATCAGAATTCTAAATTTGTGTTTTCTTCTAGCGATGAAATTTCAAGAGAAGTTGATAATGCTGGTGAATCAAAGAAGTCTCGTGTAGTGTGGACAACAGAATTGCATGGTATATTTGTCAAAGCTGTGAATCAAATTGGACTTGCAAGTATGATTCTTCAGCCTTTTTGCTCTATTTTCTTTTTCACTGTTCATCCAATCTATGAATTTAATGCATACTACATGTATGAGATAAGATCTGATCTGACACTTTCAGTTTTCCTCCTTCATTCTCATCTGTTAGATGCTGTGCCAAACAAGATTCTGCAACTCATGAATACGCCTCATTTGACAAGAAACAATGTTGCAAGCCATTTGCAGAAATATAGAAATGTTTTGAAGGAAAAAGCTAGCAAAGAGAAAGAGAGAAAACCAGAACCAAAAAGAGAGCAGCAATCTGTCTCAGATATACAAATGGATAATCATCATGCAGAAGAAGCTTTTGGTTTTGCACTTCCTGATCCACTTGCTATTTATCCAAGCTTTGCTATTCCTCAGAATTTTCCTCAGGATTTTCCACAGACTATAGATTCTGGATGTGGAATATGGTCTCCATATAATGCAATCTTAGCAGAAGATCAGGCTATGCTTCAGATAAACACTGTGTCAGTAGATACATTGCAGCAGCAGCAGCAGCAGCAGCAGTACATGCAGTCTTCAGTGATGCAGAATCAAGTTCCTCTGATAAATTTTGAACCATCTTCTTTGATAATTTCTGAAAATCCATATTTGGTGACCCAGAATGATAACTTTGGCAGAAATGTTGATCAGAGAAGCATTCAGTGA 1284 0.3684 MAKISLEKKIFCEYPSNLRVLAIDTDLTVLEFIKKVCNEYCYEVITCTESLHATIILQEKRSTIDLVLMEVHMPKMDGYEFLLTTQEIDVPKIMMSFDDSKKSVMKTIKLGACDYMIKPLHEDRLRNMWTHVVRKSMNENKMRKKIGNSLEDDNQNSKFVFSSSDEISREVDNAGESKKSRVVWTTELHGIFVKAVNQIGLASMILQPFCSIFFFTVHPIYEFNAYYMYEIRSDLTLSVFLLHSHLLDAVPNKILQLMNTPHLTRNNVASHLQKYRNVLKEKASKEKERKPEPKREQQSVSDIQMDNHHAEEAFGFALPDPLAIYPSFAIPQNFPQDFPQTIDSGCGIWSPYNAILAEDQAMLQINTVSVDTLQQQQQQQQYMQSSVMQNQVPLINFEPSSLIISENPYLVTQNDNFGRNVDQRSIQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0084 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR 248 406 IPR045279 GO:0009736
Vra2g0084 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 202 IPR045279 GO:0009736
Vra2g0084 427 ProSiteProfiles Response regulatory domain profile. 19 133 IPR001789 GO:0000160
Vra2g0084 427 SUPERFAMILY Homeodomain-like 248 280 IPR009057 -
Vra2g0084 427 MobiDBLite consensus disorder prediction 281 301 - -
Vra2g0084 427 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vra2g0084 427 SUPERFAMILY CheY-like 16 145 IPR011006 -
Vra2g0084 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 277 IPR006447 GO:0003677
Vra2g0084 427 Gene3D - 17 153 - -
Vra2g0084 427 Gene3D - 176 281 - -
Vra2g0084 427 SMART REC_2 18 129 IPR001789 GO:0000160
Vra2g0084 427 CDD REC_typeB_ARR-like 20 133 - -
Vra2g0084 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 248 406 - -
Vra2g0084 427 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 14 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0084 Vra-Chr2 684539 686167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0084 7 281 Response Regulator Gene Family AT4G31920 34.286 1.85e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra2g0084 Response_reg 6.8e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0084 - K14491 vra:106778071 822.002