Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0083 ATGGCTAACTCTGCTCCTCCTGCAACTTACATTGAGGACAAACCTCCCACCAAGAAGCCTCGTGTTGTATGGGATGAAAAACGGCATGCTGCATTTGTCAGCGCTGTCCAAATAATTGGAATTGAAAATGCTACGCCAAAGAAAATTCTTCAACTCATGAATGACCCTCGTTTGGAAAGAGCACATATTGCCAGTCATTTACAGAAATTCAGAAATTATTCAAAACAGCAGCAAGAGAAAGAGGAACAACAACAGAAACAGGAACAGCAACAAAATGACACGTCTCTCGATTCAGGGAGACAAATAGAGCAACAACAATCGCAACAGAAGGACATGTCATTGACAAGGACGTCTGCATTGCAACCTTGTTCTGCTACTACTGCAATGACAAATTTTCATCCTGGTTTTACAGGTAACATAGAAGAGGAAGCTTTGGCACATGGTCATCCTTTAGCAGCCTTTCCTAACGTTGCCATTACCGAGAATTTTTCAGAAGAACAATCAAATCTAAATGGACAACTGTCTAACAATTTTAATGCAGAGCAAGTTCTGGCACATGATCTTCCTTTAGCAACCTTTCCTAACATTGCCAGTAACCAGAATTCTCAACTGGGAACTCTAGATTATGCTTATATATATGGATTACTTTATCCATCTGATATACCGCTAGTTGACAATCCCACTATGCTACAAACAGATAATATGCAGCAGTCGATGAATCATAATCAAATGTATCCAATGAACTTTCAGCCATCTTCCACGTTGATTTCTGGAAATCCAGCTTTTCCCTCCCAGAATTACAACTTTGGCATGAATATGGGTCATGGTTCTCAATCAATACAAGATGGAAATAGCATAGGTGAAGGCGTTCTTGATCAATATAGCACTAGAGATTCCATTTATCGTCCAGAGTTTCAAAATGCAGGTTTGCCAAGTGGTGCTGTCAGACGTTTTGCTGCAAGTGATTATAGGAGCCAAAATCCCTATATTGATGATAAATTCTATCAGAAATGA 1014 0.3964 MANSAPPATYIEDKPPTKKPRVVWDEKRHAAFVSAVQIIGIENATPKKILQLMNDPRLERAHIASHLQKFRNYSKQQQEKEEQQQKQEQQQNDTSLDSGRQIEQQQSQQKDMSLTRTSALQPCSATTAMTNFHPGFTGNIEEEALAHGHPLAAFPNVAITENFSEEQSNLNGQLSNNFNAEQVLAHDLPLATFPNIASNQNSQLGTLDYAYIYGLLYPSDIPLVDNPTMLQTDNMQQSMNHNQMYPMNFQPSSTLISGNPAFPSQNYNFGMNMGHGSQSIQDGNSIGEGVLDQYSTRDSIYRPEFQNAGLPSGAVRRFAASDYRSQNPYIDDKFYQK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0083 337 Coils Coil 70 93 - -
Vra2g0083 337 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g0083 337 MobiDBLite consensus disorder prediction 73 87 - -
Vra2g0083 337 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 287 IPR044841 GO:0003700|GO:0006355
Vra2g0083 337 Gene3D - 16 76 - -
Vra2g0083 337 SUPERFAMILY Homeodomain-like 17 75 IPR009057 -
Vra2g0083 337 MobiDBLite consensus disorder prediction 72 118 - -
Vra2g0083 337 MobiDBLite consensus disorder prediction 88 118 - -
Vra2g0083 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0083 Vra-Chr2 679461 680846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0083 12 76 Response Regulator Gene Family AT3G16857 55.385 1.40e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra2g0083 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0083 - - vra:106778061 652.899