Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0080 ATGGACTTCAGCTATAACAAGGTGGAAGGTGGTATTTCTGCAAATTGGGGTGCCTGCAAAAGCTTGCAATTTCTCAACATGGCTGGAAATAGAGTAAGCGGTTACATTCCAAGTGATATTTTTCAGTTGGACCAACTACAAGAGCTCGACCTATCCTCCAACCAATTGTTAGCACAGATTCCACCACAGATAGGAAATTCCTCCAACTTGTACAACTTAAATTTAAGTCACAACAATCTCTCTGGTGTGTTACCAGCAGAAATTGGAAAACTTTCCAGTTTACGGTCCTTAGATCTGTCCATGAACGTGCTGTTGGGATCAATCCCAGAGCAGATAGTGGACCTCTCCTTCTTGCAAAATTTAAATCTAAGCAACAACAAATTCAATGGCACAATCCCCTACCAAATTGGAAACCTTGCAGATTTACAATATTTTTTGGATTTGAGTTACAATTCTCTTTCAGGAGATATTCCCAGTGATCTTGGCAGGCTTTCAAATTTGATAAGCCTGAATATCTCTCACAACAATATTTCAGGTTCCATCCCTCACTCCCTTAGCGAAGTGCTGAGTTTGTCAGAAATCAACCTCTCCAACAATAATTTGGAGGGTCAAGTTCCCGAAGGTGGCATATTCAACTCTTCTTATTCCCTGGATTTGAGCAACAACAAAGGTCTATGTGGGCATATTCGGGGCTTGCCTCCTTGTAATGTCTCTGTCTCCAAACCTGACGGTGCATCAAGTAAAAGAAACAAGGCTGTGATCCCCATTGCAGCTTCACTTGGAGGTGCTCTTCTGATTTCTCTGGTGTTAGTTGGGATTTTCTTCTTTGGCTACAAGAGAAAATCAAGAGCTCCAAGGCAAAGAAATTCGTTCAGTAGACTGAATCCATTTTCAATCTGGTACTTCAATGGGAGAGTTGTGTATAGAGACATAATTGAAGCTACCGAGAACTTTGATAGCCAATATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTATAAAGCGGAGATGTCAGGAGGTGAAGTATTTGCTGTAAAAAAGTTGAAGTGTGATTCAGACAACTTAGACTCTGAGAGAATAAAATCCTTTGAGAATGAGGTAAAAGCCATGACAGAAACACGCCACAGAAACATCGTGAAGCTTTATGGATTTTGCTCTCAAGGGGTGCACACCTTCCTGATTTATGAGTACATGGACAGTGGAAACTTATCTGACATGCTTAGAGATGACAAGGGAGCAATGAAACTGAATTGGCACAAAAGGGTTGAAATTATCAGAAGTGTAGCAAGCGCTTTGTCCTACATGCACCATGATTGCGCTTCACCTTTAATTCACAGAGACATATCCAGCAAGAACGTTTTGCTGTCCCTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCCAGGTTTCTGAAACCGGATTCTCCCATTTGGACATCATTTGCTGGAACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCAGTGAGTGAGAAATGTGATGTGTTCAGCTTTGGCGTTTTGGCTTTGGAGATTCTTACGGGAAAGCACCCAGGTGATATTGTTTCCTACATGCAAAGTTGTAGTGAGCAGAAAGTAAACATGAAAGAGATTTTAGACCCTCGTCTCTCGCCTCCTTCCAAGAAGCATTTGAAGCAAGTGGATTTGATTGCTAACATAGCTCTTTCATGTTTAAAGACAAACCCTCAATCTAGACCAACTATGCGAAGCATAGATCAGCTGCTTGAAATGGAGACTGCAAACATATAA 1779 0.4154 MDFSYNKVEGGISANWGACKSLQFLNMAGNRVSGYIPSDIFQLDQLQELDLSSNQLLAQIPPQIGNSSNLYNLNLSHNNLSGVLPAEIGKLSSLRSLDLSMNVLLGSIPEQIVDLSFLQNLNLSNNKFNGTIPYQIGNLADLQYFLDLSYNSLSGDIPSDLGRLSNLISLNISHNNISGSIPHSLSEVLSLSEINLSNNNLEGQVPEGGIFNSSYSLDLSNNKGLCGHIRGLPPCNVSVSKPDGASSKRNKAVIPIAASLGGALLISLVLVGIFFFGYKRKSRAPRQRNSFSRLNPFSIWYFNGRVVYRDIIEATENFDSQYCIGEGALGKVYKAEMSGGEVFAVKKLKCDSDNLDSERIKSFENEVKAMTETRHRNIVKLYGFCSQGVHTFLIYEYMDSGNLSDMLRDDKGAMKLNWHKRVEIIRSVASALSYMHHDCASPLIHRDISSKNVLLSLNLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVSEKCDVFSFGVLALEILTGKHPGDIVSYMQSCSEQKVNMKEILDPRLSPPSKKHLKQVDLIANIALSCLKTNPQSRPTMRSIDQLLEMETANI* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0080 592 Pfam Protein kinase domain 323 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0080 592 Pfam Leucine Rich Repeat 166 186 IPR001611 GO:0005515
Vra2g0080 592 Gene3D Ribonuclease Inhibitor 1 242 IPR032675 -
Vra2g0080 592 ProSiteProfiles Protein kinase domain profile. 318 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0080 592 PRINTS Leucine-rich repeat signature 70 83 - -
Vra2g0080 592 PRINTS Leucine-rich repeat signature 91 104 - -
Vra2g0080 592 Gene3D Transferase(Phosphotransferase) domain 1 398 591 - -
Vra2g0080 592 Coils Coil 592 592 - -
Vra2g0080 592 Pfam Leucine rich repeat 68 128 IPR001611 GO:0005515
Vra2g0080 592 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 1 589 - -
Vra2g0080 592 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Vra2g0080 592 SUPERFAMILY L domain-like 2 227 - -
Vra2g0080 592 SUPERFAMILY Protein kinase-like (PK-like) 291 586 IPR011009 -
Vra2g0080 592 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 589 - -
Vra2g0080 592 SMART LRR_typ_2 91 115 IPR003591 -
Vra2g0080 592 SMART LRR_typ_2 43 67 IPR003591 -
Vra2g0080 592 SMART LRR_typ_2 164 188 IPR003591 -
Vra2g0080 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 443 455 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0080 Vra-Chr2 668747 671135 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0080 1 491 Receptor kinase-like Gene Family AT4G08850 43.347 2.95e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra2g0080 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0080 - - vra:106755854 1082.4