Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0075 ATGAAACGGGGAAGAGGAGAGAGCATGGGAGAATCCAGTTCTAGGGTTTCTCCAACTCTTCAGCACCCAACAGCAGGCATCATCAAGCGACTTCGCCTCGAGAACTTCATGTGTCACACCAAACACGAGACTGAGTTCGGAAACCATGTCAATTTCATCACGGGCCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGAGCTTCCACTTTGAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCGTGTTATCAATTTAGAACGTCGGATATCTGAATCCGCAAGTTCTACTACATTAAAAGATCACCTAGGAAGGAAAGTTGTTAGTCGAAAGGCTGAGCTTCAAGAAATAGTTGAACATTTTAATATCGATGTGGAGAATCCGTGTGTAATTATGACTCAAGACAAAAGCAGGGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTTGAAAGCATTTTTAAGGAAATTACTATCGCATATGAAACAGTTAAAGAGTTAGAGGCTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTTCAAGTTAAAATTAGAAACATGGAGCATGTTGAACAAATATCCATGCAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAATCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATTTGGTTGAAAAGTTGAAGGAAAGATGCTCCAAGAAGAGAGATGAAATTGCAAGAATGTTGGAAAAGACATCACAAGTTAAGCAAATGAAGGAAAATTTAAACCACTCTGTGTCCATGGCAAAAAAAGAGGCATTTGGACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTTGAGCAACAAGTACAGGATATTCACGAGCAGCATGCAAAAAATACTCAGGCTGAAGAATCTAACATGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAACCCTGAAGAGATTGAAAGAAGAAGATGCTTCTTTAATGGAGAGTATGCGTAGGCAAAATGACGAAATCCAAAAGATAGGTGATAAGATTCATGATCATGAAAAAAATCACCATGGTACCATGTCCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGATTACTGTTTTCGGAGGAGCCAAAGTAATCTATTTGTTACAAATAATTGAGAGATACCACCAAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTAGCCCTTGAATATGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTAATCATGCGGATTGTCGTCTTTTAAAACAATGTGCGAAGGAAGCAAACTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGTTGAAGATACCACAACATATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACACTGCGATAATCACACTGTGATTAATGTCTTAGTGGATCAGGGAAATGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGCAAAGTGGTTGCCTTTGAGCGAAGGATCCAAAATTTGAAGGAGGTCTACACAGCAAATGGATGTAGAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCAACCAAATAAGAGGCAAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCATGCTGAAGCATCTGATGAACAAAGGATTGCCAATGACCTTAAAAAGAATAAGAGAGAGGCAGAAGTCAAGCTTGAGGAACTTGACAAATATATGAGATCTATTAAGAGACAATGTGTAAATGCAAGTAAAAGTTTTACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATCTGCACACCGCTGAAAATAATGCAACGCCTTTGTCCTCTGTTGATGAGCTTGTTGAAGAAATTTCAGAGATCCAGAAAAAAATAGAAGAAGAACAAGTTTTGCTAGAGGGCCTTCAGAAAAAGGGGCTTGAAGCAGCAGGAAAAGCAGATGATCTTAAAGTAGAATTCGACAAACTTTGTGAATCAGCGAATGGTGAAATTGCTGCCCTGGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAATAAGGCAAAGGATCATTATGAGGGTGTCATGAAAAACAAGGTCCTAATTGATATTGAGGAGGCAGAGGACCACTATCAGGAGCTTACAAAGAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCTCTCAGAATGAACTTGATTCATTAGGAGGTTGTGATGGCAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTTATGCGCGAGAGTCAAAGGTACTCGGAATCAATCGATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTGCGAAAAGGCAGCAAGTTTACAGAACCCTTCAACAGAAATTGGATGCTTGCCGGAGAGCCTTGGAGTTACGTACGAGAAAGTTTCAGAGAAATGCAACATATCTGAAGCACCAACTTTCTTGGAAATTTAATGACCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACAAAGCTGTTCGAGATACTAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCGTTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTTGTTGATTTTGCGGAGGCACATGGATCACAGTGGATATTCATCACTCCGCATGATACTAGCATGGTGAGGGCTGGGGACAGGATAAAAAAGATGCAGATGGCTGCTCCTCGTTCTTGA 3195 0.3987 MKRGRGESMGESSSRVSPTLQHPTAGIIKRLRLENFMCHTKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIQVEIQNEGEDAFKPEIYGRVINLERRISESASSTTLKDHLGRKVVSRKAELQEIVEHFNIDVENPCVIMTQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESIFKEITIAYETVKELEAAIRPIENELNELQVKIRNMEHVEQISMQVQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVEKLKERCSKKRDEIARMLEKTSQVKQMKENLNHSVSMAKKEAFGLERDCKSKTSNIQKMVRQLKMLEQQVQDIHEQHAKNTQAEESNMEEKLKVLKDEVHAAELTLKRLKEEDASLMESMRRQNDEIQKIGDKIHDHEKNHHGTMSRIRDLQQHQSNKITVFGGAKVIYLLQIIERYHQRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNSFIVTNHADCRLLKQCAKEANYGHLQIIIYDFSIPRLKIPQHMLPDTEHPSILSVLHCDNHTVINVLVDQGNVERQVLVKDYEVGKVVAFERRIQNLKEVYTANGCRMFSRGPVQTVLQPNKRQRTGRLCGSFEDEIEKLHAEASDEQRIANDLKKNKREAEVKLEELDKYMRSIKRQCVNASKSFTSKKLALEEEMHLHTAENNATPLSSVDELVEEISEIQKKIEEEQVLLEGLQKKGLEAAGKADDLKVEFDKLCESANGEIAALEKAESELVEIEKEMGSANKAKDHYEGVMKNKVLIDIEEAEDHYQELTKKRKESVEKASIICSQNELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIAKRQQVYRTLQQKLDACRRALELRTRKFQRNATYLKHQLSWKFNDHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNKAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRAGDRIKKMQMAAPRS* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0075 1064 Gene3D - 27 232 IPR027417 -
Vra2g0075 1064 CDD ABC_SMC6_euk 28 182 - -
Vra2g0075 1064 Gene3D - 737 1061 IPR027417 -
Vra2g0075 1064 Coils Coil 374 436 - -
Vra2g0075 1064 Coils Coil 345 372 - -
Vra2g0075 1064 Coils Coil 647 688 - -
Vra2g0075 1064 Coils Coil 887 907 - -
Vra2g0075 1064 Coils Coil 807 834 - -
Vra2g0075 1064 Pfam RecF/RecN/SMC N terminal domain 28 1059 IPR003395 -
Vra2g0075 1064 Coils Coil 771 798 - -
Vra2g0075 1064 Coils Coil 722 749 - -
Vra2g0075 1064 Coils Coil 261 316 - -
Vra2g0075 1064 Coils Coil 215 242 - -
Vra2g0075 1064 MobiDBLite consensus disorder prediction 1 21 - -
Vra2g0075 1064 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 20 1064 - -
Vra2g0075 1064 CDD ABC_SMC6_euk 942 1064 - -
Vra2g0075 1064 SUPERFAMILY Smc hinge domain 438 604 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vra2g0075 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 361 IPR027417 -
Vra2g0075 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 1057 IPR027417 -
Vra2g0075 1064 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 20 1064 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0075 Vra-Chr2 616263 638060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0075 9 1064 Structural Maintenance of Chromosomes family AT5G61460 59.452 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0075 K22804 - gmx:100816916 1761.89