Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0064 ATGGACTTGAAATCGAATCATACTCCTGTTCTCACTGATTCTGCACCCGTAACAAAGTCTAGGCTGTGTGCGCATTCCAGTTTGTTGCCTTACTCCCATTCCGGGGCAACTTTTACGCATGGAATGTTATTGACTATCCCAAGGAAGAAAACAGGAATTCTTGAGGATGTTCGTTCCAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATTTTAGCCATGGGTTTGCATCATCTGACTCTGACACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCTGCTCTTACATCTTTTGATCAAATCACAAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCGTTCATGTCGGACAATATGCGAGCTGCTGTTAAAAAGGTGGCAGAGTATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATATCAATTTGTAGGACTAACAGAACTCTACTACGCTGGTAGTCACGGGATGGACATCATTGGCCCTGTTAGACAATCTGAATCTGATAATCACCCGAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCCGCTGCTGAATTTGTGCCCATGATTAATGAGGTCCTCAAGTCTCTTGATGAGTGTACGAAAGACATTAAAGGTGCTAAAGTAGAGAACAATAAATTTTGCGTTTCTGTGCACTACCGGAACGTTGATGAAAAGTATTGGGATGTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGCCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCCGTCACCTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACTGACGAAGATGCATTCAAGGTTTTGAGAGAGGGGAATAAAGGTTATGGGATCTTGGTGTCTTCATCACCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAGTCAAGCTGCTTAAAAAGTCTTATATAG 1170 0.4239 MDLKSNHTPVLTDSAPVTKSRLCAHSSLLPYSHSGATFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDFSHGFASSDSDTAGAYFSWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSESDNHPNCIRSTDKQGKEVNLFQPAAEFVPMINEVLKSLDECTKDIKGAKVENNKFCVSVHYRNVDEKYWDVVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSSPKESNAVYSLRDPSEVMEFLKSLVLWKSSCLKSLI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0064 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Vra2g0064 389 Gene3D - 219 386 IPR023214 -
Vra2g0064 389 Gene3D - 121 204 IPR023214 -
Vra2g0064 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 341 IPR006379 -
Vra2g0064 389 TIGRFAM T6PP: trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Vra2g0064 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Vra2g0064 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Vra2g0064 389 CDD HAD_TPP 122 372 - -
Vra2g0064 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0064 Vra-Chr2 534493 540402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0064 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.429 1.03e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0064 K01087 - gmx:100819495 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0064 2 534493 540402 Vra2g0064 2 534493 540402 ECH