Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0062 ATGGCTCGTGGAAAGGTTCAGCTTAAGAGAATTGAGAACTCAGTGCACAGACAAGTGACCTTCTGCAAGCGTCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGACCTGATCGAGAGGTACACCAAGTTCACGCGAGCGGCTCATCCTGAAACATCACCCGAACCACTTCCTCTAGATGCAAAAGAGGAATCTAACTTGCTAAAACAAGAAATCCAAACACTGCAAAAGAGTATCAGGTATTTGTTTGGAGGTGGAAACAAGACCTCAACAATCGATGAACTACAAGTGTTGGAGAAGAATCTGGAAACTTGGATATATCATATTCGCTCAATGAAGACCAACATCATGTTACAAGAAATTGAAGCATTGAAAGATAAGGAGGGAACACTTAAAGCAGCAAATAAATATCTCCATGATAAGATTGTAGAGAATGCTGCAATTCATAACTTTGCTCAATTTCCGACCGATGTTCCATACCCACTAATTATACAAGATGGAACTTTTCAACACTACTAA 606 0.4175 MARGKVQLKRIENSVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQDLIERYTKFTRAAHPETSPEPLPLDAKEESNLLKQEIQTLQKSIRYLFGGGNKTSTIDELQVLEKNLETWIYHIRSMKTNIMLQEIEALKDKEGTLKAANKYLHDKIVENAAIHNFAQFPTDVPYPLIIQDGTFQHY* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0062 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vra2g0062 201 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Vra2g0062 201 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra2g0062 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra2g0062 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra2g0062 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 - -
Vra2g0062 201 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra2g0062 201 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 199 - -
Vra2g0062 201 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vra2g0062 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra2g0062 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra2g0062 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra2g0062 201 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0062 Vra-Chr2 521769 526579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0062 1 199 MADS-box Gene Family AT1G71692 57.619 1.11e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra2g0062 K-box 5.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0062 - - gmx:100783345 338.576