Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0061 ATGGATAGTTTCACTCATGTTCCCCCCGGTTTTAGGTTTCATCCAACGGATGAAGAGCTTGTTGATTACTACCTTAGGAAGAAAGTGGCTTCAAGGAGGATTGATCTGGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACGGAAGAGCAAAACGAATGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCTGGGTTTTGGAAAGCGACAGGAAGAGACAAGGCAATCTATTCCAAACATGAACTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCACCAAATGGACAAAAGTCAGATTGGATAATGCATGAATATCGGCTTGAAACAGAAGAAAATGGCACTCCACAGGAAGAAGGTTGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACAATGCGTAAAGTGAATGAGCACGAGTCTCCCAGTTGGTATGATGAGCAAGTATCTTTCATTCAAGACATGGACTCACCGAAGCAGACCTCTCAATCTAATCTGGTCTACCAGCTTCCCTATCATTGCAAGAAAGAGCTAGATGTGCCCTACCAGATGCCTCGTGACCACTTCCTTCCACTTCTGGAGAGCCCAAATCCCATGGCACCATATCTTCTAGATCATGTGAACCACTCCACCACTCTGCTTCCCTCGTTACTCATACAAGAAGAACATGTTATAGGTCAGCAAATAAACCTTCAGACAACCTACGGCAAAAGCAACCGCAATGATCAAGTAACTGATTGGCGAGTGCTTGACAAGTTCGTTGCTTCACAACTCAGTCAAGATGGATCCAAAGACAATGCCTACTCAAACACCACAGCCAGTATCTTTCACGGCAATGACAGTGGCAATTGCAATGTACAGTTCAGACATTTCGACAAACATGAGATGGTGGTGCCTCCAGAAAATGCCTCAACATCAAACTCCAGCTGCCCAATTGCATTATGGAAATAG 1035 0.4357 MDSFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETEENGTPQEEGWVVCRVFKKRVTTMRKVNEHESPSWYDEQVSFIQDMDSPKQTSQSNLVYQLPYHCKKELDVPYQMPRDHFLPLLESPNPMAPYLLDHVNHSTTLLPSLLIQEEHVIGQQINLQTTYGKSNRNDQVTDWRVLDKFVASQLSQDGSKDNAYSNTTASIFHGNDSGNCNVQFRHFDKHEMVVPPENASTSNSSCPIALWK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0061 344 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Vra2g0061 344 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vra2g0061 344 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vra2g0061 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 331 - -
Vra2g0061 344 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vra2g0061 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0061 Vra-Chr2 511076 515095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0061 1 344 NAC Transcription Factor Family AT1G12260 56.267 4.68e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g0061 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0061 - - gmx:100809525 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0061 2 511076 515095 Vra2g0061 2 511076 515095 ECH