Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0059 ATGGCTAACTCTGCTTCTCCTGCAACTTACATTGAAGACACACCTCCTCGAGTCCCGTCAGCTCTTACTATCGCTGCCATTGACACTAACGTAACCGTTCTTGAATTCATCAAGAACACATGCAACCAGGATGTTCTGGCGTCCTCTGAATCTCAAAGTGCTGCGATTACATTACAAGAAAGGAAACAGCATATTGATTTGATACTCATAGAGGTTGATATGCCAATCATGAACGGCTACGAATTTATAGAATTTCTCAAGAAAGAACAAATTAATGTTCCTCTCATAATGATGTCTTCGGATGATAGTATGTCTTCCAGATTGAGGGCGATTAAACATGGAGCTTGTGATTATTGGATTAAACCTTTCCATGAGTTTCATTTGAAGAATAAGTTGACACGTCTATTTCAGAAGAAGTGCATCTGTGCAGATAAGCTGCAAAAGGATACTGGTTGCTTGGAAGATCATAATAAAAGAAGAGGAATAAGTGATAATTCTGAACTGGCTTCGTCTATGGTTCATGGGAGCAATAGCATGTCTGAAGAAAGCGATGATGTTGATGAATCAAGTAATCCACCTCCCACCAAGAAGCCTCGTGTTGTATGGGATAAAAAACTGAATGATTCATTTCTCAACGCCGTGGAAATACTTGGAGTTGATAATGCTGTGCCGAAGAAAATTCTTGAAATCATGAATGAACCTCGTTTAGAAAGATCACATGTTGCTAGTCATTTGCAGAAACACAGAAATTCTTTAAAAAAGGGCAAACAGAAGGGCAAGTCATGCGATCCAGAGACACAGATACAGCAGCAACAACCGCAACAGAATGACATGTTTCTCATTTCAGGGAGACAGATAGAGCAACAACAATCGCAACAGAATGACATGTCATGGAACACGGAACCAAGGATGTGCGCAGTTGAAAGAATTCACTGGCAACCTTGTTCTGCTACTACAAGGACAGGTAACATGGTAGAGGAAGCTTTGGCAAATATACAATTGGCTGACAATTTTCATGCAGAGGCAACCTTGGCACATGATCAGCCTTTAGAAAGCTTTCCTAACATTGCCAGTTACCAGAATTTTCAACTGGAAACTCTAGATGATGCTTCTCTATGGGAATTATTTTTTCCATCTTATACAGAGCAAGTTGACGATCCCATCATGCATCAGATAAATAATATGAATGTACAGCAACAAAATGACATGTCATTCATCTCAGAGAGACAGCTACAAAAACAACCGCAACAGCATGACACGTCTCTCGTTTCAGAGAGACAAATAGAGCAACAACAATCGCAACAGAAGGACATGTCATTGCCAAGGACGTCTGCATTGCAACCTTGTTCTGCTACTGCAATGACAAATTTTCATCCTGGTTTTACAGGTAACATAGAAGAGGAAGCTTTGGCACATGGTCATCCTTTAGCAGCCTTTCCTAACGTTTCCATTACCGAGAATTCTTCAGAAGAACAATCAAATCCAAATAGACAACTGGCTAACAATTTTAATGCAGAGCAAGTTTTGGCACATGATCTTCCTTTAGCAACCTTTCCTAACATTGCCAGTAACCAAAATTCTCAACTGGGACCTCTAGATTATGCTTATATATATGGATTACTTTATCCATCTGATATACCGCTAGTTGACAATCCCACTATGCTACAGACAGATAATATGCAGCAGTCGATGCATCATAATCAAATGTATCCACTGAACTTTCAGCCATCTTCCACGATAATTTCTGGAAATCCAGCTTTTGCCTCCCAGAATTACAACTTTGGTATGAACATGGGTCATGGTTCTCAATCAATACGAGATGGAAATAGCATAGGTGAAGGAATTCTTGATCAATATAGCACTAAAGGTTCCATTTATCCTCCACAGTTTCAAAATGGTGCTGTCAGACGTTCTGCTGCAAGAGATTTTAGGAGCCAAAATCCCAATGTTGATGATAAATTCTATCAGAAATGA 1974 0.3972 MANSASPATYIEDTPPRVPSALTIAAIDTNVTVLEFIKNTCNQDVLASSESQSAAITLQERKQHIDLILIEVDMPIMNGYEFIEFLKKEQINVPLIMMSSDDSMSSRLRAIKHGACDYWIKPFHEFHLKNKLTRLFQKKCICADKLQKDTGCLEDHNKRRGISDNSELASSMVHGSNSMSEESDDVDESSNPPPTKKPRVVWDKKLNDSFLNAVEILGVDNAVPKKILEIMNEPRLERSHVASHLQKHRNSLKKGKQKGKSCDPETQIQQQQPQQNDMFLISGRQIEQQQSQQNDMSWNTEPRMCAVERIHWQPCSATTRTGNMVEEALANIQLADNFHAEATLAHDQPLESFPNIASYQNFQLETLDDASLWELFFPSYTEQVDDPIMHQINNMNVQQQNDMSFISERQLQKQPQQHDTSLVSERQIEQQQSQQKDMSLPRTSALQPCSATAMTNFHPGFTGNIEEEALAHGHPLAAFPNVSITENSSEEQSNPNRQLANNFNAEQVLAHDLPLATFPNIASNQNSQLGPLDYAYIYGLLYPSDIPLVDNPTMLQTDNMQQSMHHNQMYPLNFQPSSTIISGNPAFASQNYNFGMNMGHGSQSIRDGNSIGEGILDQYSTKGSIYPPQFQNGAVRRSAARDFRSQNPNVDDKFYQK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0059 657 Pfam Response regulator receiver domain 25 132 IPR001789 GO:0000160
Vra2g0059 657 MobiDBLite consensus disorder prediction 155 200 - -
Vra2g0059 657 MobiDBLite consensus disorder prediction 409 444 - -
Vra2g0059 657 ProSiteProfiles Response regulatory domain profile. 23 136 IPR001789 GO:0000160
Vra2g0059 657 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 443 IPR045279 GO:0009736
Vra2g0059 657 Gene3D - 194 254 - -
Vra2g0059 657 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 18 443 - -
Vra2g0059 657 SUPERFAMILY Homeodomain-like 195 254 IPR009057 -
Vra2g0059 657 Gene3D - 22 151 - -
Vra2g0059 657 MobiDBLite consensus disorder prediction 164 179 - -
Vra2g0059 657 SMART REC_2 22 132 IPR001789 GO:0000160
Vra2g0059 657 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Vra2g0059 657 SUPERFAMILY CheY-like 22 144 IPR011006 -
Vra2g0059 657 MobiDBLite consensus disorder prediction 239 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0059 Vra-Chr2 501346 503689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0059 17 254 Response Regulator Gene Family AT4G31920 34.440 4.71e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra2g0059 Response_reg 9.8e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0059 - - vra:106778015 1273.46