Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0054 ATGGAAGCCATTTCTTCTAAGCATCTTCTCACAAATCTCTTGCTCATTTTTGCTTCTAGTTTCACCACGCTCTGTGCCAACAAAGCCATTCAAACACCACACCAAGAAGCCAGCACACTGTTCATCAGAACATCTTGCAGTTTCACAACTTATCCCAGACTCTGCTATACCTCCTTAGCGAGGCATGCGGAGTTGATCCAAACGAATCGTGTGCTTTTAACCGGCGCCGCCCTTAACGTGACTCTTGCATCGGCGAAATCGACCGCAGCAGTGGTGTCGATGATGGCGAAGAGCCAGGGGCTGAAGCCCAGAGAGGTTGCAGCGATGAAAGACTGTGTGGAGGTGCTGAGTGACTCGGTGGATGAACTCAGAAGGTCTATCGATGGGATGACTCATCTAAGAACCTCCAATTTTGAGATGACGATGAGTGACTTACAGACATGGGTGAGTGCTGCTTTGACTGATGAGAACACTTGCACAGATGGATTTCAAGAGAGTGCCACCGCCACCGCCACCGCCGCCGCCGCCACCACCACAACCACCATTGCTGGTACAAACACTAAGACCCGTGTGAGAGGACTGGTTGTGCAGGTAGCCCAATTGACCAGCAATGCATTGGCCTTGATTAATCAGCTAGCTAATCAAGGTTAA 651 0.5023 MEAISSKHLLTNLLLIFASSFTTLCANKAIQTPHQEASTLFIRTSCSFTTYPRLCYTSLARHAELIQTNRVLLTGAALNVTLASAKSTAAVVSMMAKSQGLKPREVAAMKDCVEVLSDSVDELRRSIDGMTHLRTSNFEMTMSDLQTWVSAALTDENTCTDGFQESATATATAAAATTTTTIAGTNTKTRVRGLVVQVAQLTSNALALINQLANQG* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0054 216 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 212 IPR006501 GO:0004857
Vra2g0054 216 CDD PMEI-like_3 44 214 - -
Vra2g0054 216 Pfam Plant invertase/pectin methylesterase inhibitor 41 208 IPR006501 GO:0004857
Vra2g0054 216 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 213 IPR035513 -
Vra2g0054 216 SMART PMEI_2 37 208 IPR006501 GO:0004857
Vra2g0054 216 PANTHER 21 KDA PROTEIN-LIKE 11 213 - -
Vra2g0054 216 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 213 - -
Vra2g0054 216 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 214 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0054 Vra-Chr2 463271 464348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0054 31 212 Carbohydrate Esterase AT1G53830 29.474 3.37e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0054 - - vra:106755267 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0054 2 463271 464348 Vra2g0054 2 463271 464348 ECH