Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0053 ATGGCACTCTTTAGAACACTCCTATCAGTTATCTTCCTCTCAACCTTTCTCCAATTACCAGCATCAACAAGCACCACCGATTCCCTCAAACCCTACAAAAACTTCATAAAAGATAAGTGTAATTCAACCACTTACGCAGCACTTTGCTACAAATCTCTCTCCCCGTATGCATCAAAAATCAAAAGAAACCGCGTAACGCTCACCAAACTCTCCATTCATGTGGCTCTCAAAGCAGCCAAGAGTGCCAAAAGCACGTTGACGAAGTTCTCCAAGATGAAGCTATCACATGGAGAAAGCTCCGTCATTGCTGACTGCAGAGAGAACATTGAGGACACGTTGGATCTGCTTGAGCAATCTGCACAAGGGTTGGCACATTTGAACGGTGCCTCTACTGCTGATGAGAGGTTTCAATGGGACAGCATCAAGACCTGGGTCAGTGCTTCCATAACAGATGAATCTACTTGCATAGATGAGTTTGATGAAATAAAAGTGCGTTCTTCACTGAGGAACAAGATCAAAACCACTGTTTATAACGTTTCTTCCTTGATTAGCAATGCTTTGGCACTCGTCAACAGGCTTTACTAG 585 0.4359 MALFRTLLSVIFLSTFLQLPASTSTTDSLKPYKNFIKDKCNSTTYAALCYKSLSPYASKIKRNRVTLTKLSIHVALKAAKSAKSTLTKFSKMKLSHGESSVIADCRENIEDTLDLLEQSAQGLAHLNGASTADERFQWDSIKTWVSASITDESTCIDEFDEIKVRSSLRNKIKTTVYNVSSLISNALALVNRLY* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0053 194 CDD PMEI-like_3 40 193 - -
Vra2g0053 194 PANTHER PECTINESTERASE INHIBITOR-LIKE 3 194 - -
Vra2g0053 194 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 193 IPR006501 GO:0004857
Vra2g0053 194 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 3 194 - -
Vra2g0053 194 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 193 IPR035513 -
Vra2g0053 194 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 193 IPR035513 -
Vra2g0053 194 Pfam Plant invertase/pectin methylesterase inhibitor 34 189 IPR006501 GO:0004857
Vra2g0053 194 SMART PMEI_2 31 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0053 Vra-Chr2 459716 460517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0053 36 193 Carbohydrate Esterase AT1G53830 28.659 1.71e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0053 - - gmx:100776299 281.182