Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0052 ATGACAATGATGCGAAAGACATTGTTGTCACTGTTATTAGTTTCCTCAGTTTTCTCAATAGCCACATCAACGAGGAGACATTCCAACAGCAACATAGATTGGTGGTGCAGCCAAACCCCGTACCCCGAGCCATGCAAATACTACATGCATGCGCAACAAACCCATTACCATCACAAACTCAAACACAAATCCGAATTCCGGGCAATTCTCATTCGCCTGGCGTTGGAAAGAGCAGTGATCATGAGAAGGAAAGCACGTGAGTTGGGGCACAACGGGATCACCAGGAAGCAGAAATCAGTTTTCCGTGATTGTCTGAAGCTCTACGACAACACCGTGTTCCATCTTAACCGTACCCTCGACGGCCTTCGGGAGAAGAGAAGCTGTTCACCCTTTGATGCGCAAACGTGGCTCAGCACAGCTCGCACAAACATCGAAACATGTCAGAACGGGGCTCTAGAACTCGGAGTCGAAGATTTCATGGTTCCCACCGAGAGATGCAATGTAACCGAGATTATAAGCAATGGCTTGTTCGTGAACTGGGCTTTCCTGAAGTACGAAGCGGTTCATTATACGGAAGATGCAGAGGCTGATTTTCCAAGTTGGTTTTCCATGCACGAGAGGAAGCTGTTGCAGTCTTCTTCAATAAGGGCACATCTGGTGGTGGCCAAAGATGGTTCGGGGCATTTCAAGAGTGTCCAAGCTGCTATCAATGCCGCTGCAAGGAGAAGGATAAAGAGCAGATTCATTATTCACGTGAAGAGAGGAGTTTACAGAGAGAATATTGAGATTGACAAGACCAATGACAACATTATGTTGTTCGGTGATGGCATGAGAAATACCATCATAACAAGTGGAAGAAGCGTTAATGCCGGGTATACCACCTATAGCTCCGCAACAGCAGGAGTTGATGGTCTTCACTTCATTGCAAGAGACATTACCTTCAGAAACACGGCGGGTCCTCTAAAGGGTCAAGCGGTGGCACTCCGATCAGCCTCCGATCTCTCTGTGTTCTATCGGTGTTCCATAGAAGGCTATCAAGACACCCTCATGGTCCACGCACAGCGACAATTTTACAGAGGATGTTACATCTACGGCACAGTTGACTTCATATTCGGAAATGCCGCCGTTGTTTTCCAAAACTGTGTCATTCTTGTAAGAAGGCCCTTAAATGGACAGGCAAACATGATCACGGCCCAAGGTCGAGACGACCCATTTCAAAACACTGGGTTTTCAATCCATAACTCTCAGATCAGGGCTGCCCCAGATCTCAGGCCCGTTATTGGCAAGTTCAAGACCTTCTTGGGCCGCCCATGGCAACGTTACTCTAGAGTTGTGGTGATGAAATCATTCTTGGATAGCATGGTGAACCCAATGGGTTGGTCTCCATGGGATGACTCTAATTTTGCTTTGAATACTCTGTATTATGGAGAGTACAAGAACTTTGGGCCCGGTTCATCCACCAGAAACAGGGTTCGATGGCCCGGTTTTCATAGCATAACTAGCCCAACCGAGGCATCCCGGTTCACAGTTGCTAACCTTCTTGCTGGGCGCACGTGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA 1596 0.4793 MTMMRKTLLSLLLVSSVFSIATSTRRHSNSNIDWWCSQTPYPEPCKYYMHAQQTHYHHKLKHKSEFRAILIRLALERAVIMRRKARELGHNGITRKQKSVFRDCLKLYDNTVFHLNRTLDGLREKRSCSPFDAQTWLSTARTNIETCQNGALELGVEDFMVPTERCNVTEIISNGLFVNWAFLKYEAVHYTEDAEADFPSWFSMHERKLLQSSSIRAHLVVAKDGSGHFKSVQAAINAAARRRIKSRFIIHVKRGVYRENIEIDKTNDNIMLFGDGMRNTIITSGRSVNAGYTTYSSATAGVDGLHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCSIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPVIGKFKTFLGRPWQRYSRVVVMKSFLDSMVNPMGWSPWDDSNFALNTLYYGEYKNFGPGSSTRNRVRWPGFHSITSPTEASRFTVANLLAGRTWLPATGVPFTSGL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0052 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Vra2g0052 531 SMART PMEI_2 27 178 IPR006501 GO:0004857
Vra2g0052 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Vra2g0052 531 PANTHER PECTINESTERASE 6 530 - -
Vra2g0052 531 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 178 IPR006501 GO:0004857
Vra2g0052 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Vra2g0052 531 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 6 530 - -
Vra2g0052 531 SUPERFAMILY Pectin lyase-like 215 530 IPR011050 -
Vra2g0052 531 Gene3D - 212 531 IPR012334 -
Vra2g0052 531 Pfam Pectinesterase 219 516 IPR000070 GO:0030599|GO:0042545
Vra2g0052 531 CDD PMEI-like_3 34 179 - -
Vra2g0052 531 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0052 Vra-Chr2 456291 458547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0052 22 531 Carbohydrate Esterase AT5G51500 59.496 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0052 K01051 - gmx:100807908 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0052 2 456291 458547 Vra5g2061 5 26271774 26277140 PCT