Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0042 ATGGTAGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGAGTCACAGCTGATCTCTATGATTTCCTCACTTTTCCGGCTACCTCTGACGCTTCCTCCGGCCAACCCTTTCGGACCTGTGTCCAACGCTTCCTCTCAGACCACGCGCGCATCACTTTCCCTCCCTCTTTATTTCCGTCTCTTATGACGTGGCAGATCCTGTTCCGTGTCGGAGACCTCGTTGATGGACCTGATCTCTCACCTTCTGTTGTCACTCTTGACATTGTTGAGGAGGATGTTACTCGTTCTCGCAGTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTTTGTCGAAAGCGATATCATTTCATAATAAGGGCTGCAAGTAATGCAATCGAACCGTATCAAAGACCTTGTTCAAGATGTGGAAACCTTCTCCAATTATCTGAAACAAGCTGTAAATCGTGTAACTTTGCCATCACCGCGGATGACCTTGAGGACTGGGTGTATCTTCAGATTGAAGATAACACCCATCTTCTTCATGGTGTGGTCCATTCCAATGGCTATGGTCACCTGCTTACTCTAAGTGGAAGAGAAGGTGGCTCTAAGCTTCTATCTGGATCTGATATCATGGATTTCTGGGACAGGCTTTGTACATCAATTTCTGTGAGGAAGGTTAGCGTGATGGACTTGTCCAAGAAATTCGGGCTGGAATACCGATTGCTTCATGCGATCACTAAAGGACATTCCTGGTATGGTAATTGGGCTTATGAGTTTGGAACAGGCAGTTATGCTCTTACACAAGATGCCTACAAAAACGCAGTGAATACCCTGTCAAGTATGCCCTTGTCATCATTTTCATTTCATGGACGGGGACCACGAAGCCGCCTGGAGTGTATCATTTCTCTTTACCAGTCTTTGGCAGAAACAGAACTTCTAAACATTCAAGATCTCTTCTCCTTTTTGTTGATGTTGATTCGTGAATGCCGTAAGCCAATAGCCATGAGAACTTTTAAGCAGACCAGTAATTTGTTGTGTACGTGGACGGGAAAAGATGTTGAAGAGGTGCAATGTGCCCTTGTCAAGGTATTGATTGCATCAGGTGCGTGTACCGAGTCCAAATGGGTGACAAGGCGTGCTCTGAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTTGACTACTGTCTTAAGCACTTCCCTGGGAAATTAGCAGCCAATGGGATGGTAGTTTGTTCACGATGTAATCCCGTTTCCTGTGCAATCGAGTTCAGGTTGGGGCCTAGGAGTAATGGACTAAATACATGTTCAAGCTATCCTACTGAAGGGCAACTAATATCTGACTTGACATTTTTATTCGACTCGATAATACATCCTGACAAAATGATGTCATACAGACCTAGGATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAAGATTACAAGCCATATGAAATGGCAATCGAACTGCCTTCTGTTATTAGGTTGTGGTGTCATGTCGAGCTTTCTGATCAGCCTAAGGACGATCCATCCCCGCCGCCAGAGCTTATAGTGTTGCCTTTGAATGCTACCGTTGCTGAGCTCAAGAGCGAAGCCACTAGTGCTTTCCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTAGGATATGGGTCAATCAGTGACTCCCTCACCGTGAAGTTCTTGCTTGGAACAAGTGGATCAGTCCGCATTCAAGGTAAATGCCCAGCAAAACATGGGCTAAGCAGATTCCGAATGGAACGAGGAACTGAGGTGTGGAAGGTTGATTGCACTTGTGGAGCCAAGGATGATGACGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGGTGTGTCAACTTGTACCGTGAGGAAACAAAAAGGTCACCAACATCTGGTGAGGAACCTAACGGAACCTGTATATTCAACTCATCTTGCAGAGATGAGGCAGCAGCTAGGGACTGTCCAACAGTTTCATGTAACATAACTGTGAATTTTGGTGTACGTTGA 2124 0.4572 MVVNERPSKRMKRRVTADLYDFLTFPATSDASSGQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPSVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAIEPYQRPCSRCGNLLQLSETSCKSCNFAITADDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSKLLSGSDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSRLECIISLYQSLAETELLNIQDLFSFLLMLIRECRKPIAMRTFKQTSNLLCTWTGKDVEEVQCALVKVLIASGACTESKWVTRRALKGAVCRGVSSPELLDYCLKHFPGKLAANGMVVCSRCNPVSCAIEFRLGPRSNGLNTCSSYPTEGQLISDLTFLFDSIIHPDKMMSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVAELKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTVKFLLGTSGSVRIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVNLYREETKRSPTSGEEPNGTCIFNSSCRDEAAARDCPTVSCNITVNFGVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0042 707 Pfam PHD-finger 612 658 IPR019787 -
Vra2g0042 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Vra2g0042 707 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Vra2g0042 707 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 680 - -
Vra2g0042 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
Vra2g0042 707 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Vra2g0042 707 CDD PHD_MMD1_like 611 656 - -
Vra2g0042 707 SMART PHD_3 611 657 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0042 Vra-Chr2 398696 401868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0042 80 656 PHD Transcription Factor Family AT5G22260 28.363 1.44e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra2g0042 PHD 2.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0042 - - gmx:100780558 1287.71