Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0041 ATGGCTTCCTCTAATGGTGGTGTGCCGCCGGGATTTAGGTTTCATCCGACGGATGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGATTTGCAAGAACGATGTAGAATTGGATCAACTCCACAGAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACCGATTGGATCATGCATGAGTACCGTCTAGAAGATGCCAATGATCCTCAAGGAAGCGCCAACGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAACGAAGGTGGGTCTACACATAACCCAGATCAACAAATGAACAATTCCTCAAGCACTAATGGACGCTCCTTCATACACAGAGAAAACCATTACTTGCTACACCAACACCAAAATCATAGAAACTCAGCAGGGCTCGAGCTTGATAAGCCTGAGCTCGCTCTCCATTACCCAAACTTGCAAAATCCCCAATACTCACTGTTCCAATCACAAACCCTTCTTCAAACCCAAAAACCTATGGTTTTTGACTACTCCTATGCATCATCTATACCTTCAGACACCCCTATAATGGCAAAGCAACTGATGGGAAACCCTAGGGAGTGTGAGAGTGGCAGCGAGGGCCTAAGATATCAAGTTTCGGAGTCTGGCATTGAAGTTGGATCGTGCGAGCCAAATCACGAAGTGGGTGGCGGAAGAGGTGAAGGAATAAACGAATGGGGCGTTCTTGATAGGCTAGTTACTTCCCATCTTGGGAATGAAGAATCAAACAAAGGGGTGAGGTTTGAGGAAGCAAACCCTCAGTCTGTGCATCAGATCAACCAGCTTTCGTTACGGGGAGAGATGGACTTCTGGGCCTATGGAGGAAAACAATGA 1089 0.4509 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPQGSANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQMNNSSSTNGRSFIHRENHYLLHQHQNHRNSAGLELDKPELALHYPNLQNPQYSLFQSQTLLQTQKPMVFDYSYASSIPSDTPIMAKQLMGNPRECESGSEGLRYQVSESGIEVGSCEPNHEVGGGRGEGINEWGVLDRLVTSHLGNEESNKGVRFEEANPQSVHQINQLSLRGEMDFWAYGGKQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0041 362 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Vra2g0041 362 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Vra2g0041 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 247 - -
Vra2g0041 362 MobiDBLite consensus disorder prediction 167 185 - -
Vra2g0041 362 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Vra2g0041 362 PANTHER PROTEIN BEARSKIN2-LIKE 5 247 IPR033519 -
Vra2g0041 362 MobiDBLite consensus disorder prediction 166 185 - -
Vra2g0041 362 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0041 Vra-Chr2 390046 392703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0041 1 355 NAC Transcription Factor Family AT1G33280 54.722 4.85e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g0041 NAM 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0041 - - gmx:100804181 672.93