Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0039 ATGATCATCAGTGAAGAAGAAGGCAAAGGTGGCTCCAGGAAGCGCCGGCGTGAGGCGGAGGCGGAGGCGGAAACTGCATTCCGCGGAGTGCGGAAACGGAGCTGGGGACGTTACGTATCGGAGATAAGGCTGCCGGGTCAGAAAACCCGGATATGGCTTGGCTCCTTCGCGTCGCCTGAGATGGCGGCGAGGGCTTATGACTCGGCCGCTTTCTTCTTGAAAGGAACATCTGCCACCCTTAATTTCCCCGACCTCGTCCACTCTCTTCCTCGCCCTCTCTCCTCCTCCCGGAGAGACATACAATCCGCCGCCGCGACAGCCGCTCTCCACCCTCCTTCTCTCGGTACCGACAGCAACAGCAATAGCAGCAGCTGGTTGGAGAACTTGGGAGACGAATCGAGGATTTCGACGATGTCGTTTGAGGATGTGAAAGATGCCCCTCTGATGAGCCCCCTAAGGGTGGACTTGACTTTTGGAGATTTCTCATGGAACAACCTCTTCCATTTCAACTATGACGATGTTCTCATGTCATGA 534 0.5581 MIISEEEGKGGSRKRRREAEAEAETAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAATAALHPPSLGTDSNSNSSSWLENLGDESRISTMSFEDVKDAPLMSPLRVDLTFGDFSWNNLFHFNYDDVLMS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0039 177 MobiDBLite consensus disorder prediction 100 122 - -
Vra2g0039 177 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vra2g0039 177 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Vra2g0039 177 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g0039 177 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vra2g0039 177 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vra2g0039 177 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Vra2g0039 177 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Vra2g0039 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 123 - -
Vra2g0039 177 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vra2g0039 177 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Vra2g0039 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 14 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0039 Vra-Chr2 374977 375510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0039 13 112 AP2-EREBP Transcription Factor Family AT5G11590 56.000 2.06e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra2g0039 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0039 K09286 - gmx:100783790 204.912