Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0035 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCCGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTCAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTTGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGGCCGGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCATATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGGGGCTATAGTTCAGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTACGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCGTGTCCCTTCAAGCTCCAATTCCTCATCGCTAG 822 0.5097 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTVSLQAPIPHR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0035 273 Gene3D - 7 113 IPR012677 -
Vra2g0035 273 PANTHER OS01G0876800 PROTEIN 1 268 - -
Vra2g0035 273 PANTHER BOULE-RELATED 1 268 IPR037366 GO:0003729
Vra2g0035 273 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Vra2g0035 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vra2g0035 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Vra2g0035 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vra2g0035 273 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0035 Vra-Chr2 352944 357785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0035 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 6.56e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0035 - - adu:107477578 433.721