Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0033 ATGGCCAAGAGGCCCTGTCTCTTATCCTTTTTCCAGTTATTGGCAGTGCTCTTTCTCACCTTCTACTCTATTTTCCCGCCTTGTGTGTCTCAGACGTCGGAAAGCCACGCTCTTTTTCAGTTCAAGAACCATTTGAAGGACTCCTTGAATTATTTGGCTTCCTGGAATGAATCAAATTCTCCATGTGACTTTTATGGAATTACATGTGATCAAGTTTCTGGGAGAGTCACAGAAATCTCACTGGACAATAAGTCCCTCTCTGGTGTCATTTTCCCATCACTCTCAGTTTTGCAGAGCCTGCAAGTTCTCTCACTACCGTCAAATTTAATTTCCGAAAAGCTTCCAGCAGAAATAAGCAAGTGTACCAGCCTCAGAGTGTTGAATCTAACAGGAAATCAATTGGTGGGAGCAATCCCAGACTTGTCTGGGCTGAGAAACCTGCAAATTCTTGACCTTTCAGCAAACTACTTTTCTGGAAGCATCCCTAGCTGGGTGGGGAATCTAACAGGACTGGTTTCACTGGGTCTTGGGGAAAATGCATACAATGAAGGTGAGATACCAGGGACTCTTGGAAATCTGAAGAACTTGACCTGGCTTTATCTTGGTGGCTCCCATTTGGTAGGAGAGATTCCAGAATCACTGTATGAAATGAAGGCATTGGAGACACTGGATATGTCAAGAAACAAAATATCTGGAAGACTATCCAGATCAATTTCCAAGTTAGAGAATCTTTACAAGATTGAGCTCTTCTCAAATAATTTGACAGGAGAGGTTCCAGCAGAGCTTGCAAACCTCACCAATCTGCGGGAGATTGACCTTTCTGCAAACAACATGTATGGTAGGCTGCCAGAGGAAATTGGGAATATGAAGAACTTGGTTGTTTTTCAATTATATGAAAACAGATTTTCTGGAGAACTTCCTATAGGATTTGCAGATATGCACCATCTCATTGGGTTCTCAATATATAGAAACAACTTCACTGGGACAATTCCAAAAGATTTTGGCCGTTTTTCAGCACTTGAAAGTATTGACATATCTGAGAATCAATTTACAGGCGATTTCCCAAAGTTCTTGTGTGAAAGAAGTAAGTTGAGGTTTCTGCTTGCATTGCAAAACAATTTCTCAGGGACTTTTCCGGAGTCTTATGCTACATGTAAATCTCTGGAGAGATTTAGGATCAGTATGAACCAGTTATCTGGGAAAATTCCAGATGAGGTTTGGGCACTTCCGTATGTAAAGATAATTGATTTGGCGTATAACGATTTCACCGGTGTTGTACCTTCAGAAATTGGGTTGTCTACTAGCTTAAATCAGGTAGTTTTGACAAAAAACAGGTTTTCAGGTAAGCTCCCATCAGAACTTGGCAGACTGGTGAACTTGGAGAAGCTTTACTTGAGCAGCAACAATTTCTCTGGTGAAATACCGCCTGAAATTGGATCTCTGAAGCAGTTATCCTCTTTGCATGTAGAAGTGAATTCCTTAACTGGTTCAATACCACCAGAACTGGGTAATTGTGCAAGACTAGTGGACTTGAATCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAATTTCACTTATGAGCTCATTGAACTCTCTTAACATATCTGGAAACAAACTTAAAGGTTCTATTCCAGATAGTTTAGAAGCCATAAAGTTAAGCTCGGTGGATTTTTCTGAAAACCTGCTTTCTGGAAGAATTCCATCTGGTCTTTTTATTGTTGGAGGAGAGAAAGCTTTTATTGGAAACAAGGGGCTGTGTTTCGAGGGAAACCTAAAACCTTCCCTGAATTCTGATCTGAAGATTTGTGCCAAAAGTCATGATCAGCCAAGGGTTCCTGCTAATAAATTTGTCTTTATCTTTCTCATTGCTTCTACTTTTGTTGTTATTTTAGCTGGTTTGCTGCTTTTGAGTTGTAGAAGCCTCAAGCATGGTGCAGAAAATAGCATGCAACGTCAGAAGGAAACAAGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTGGATATCGATGCTGATGAAATATGTAATCTGGATGAAGATAATTTGATAGGTAGTGGTGGCACAGGAAAGGTTTATCGAGTGGAATTGAGGAAAAATAGAGCCATGGTGGCTGTCAAGCAACTAGGGAAAATAGATGGTGTGAAAATTTTAGCTGCAGAGATGGAGATTTTGGGGAAAATCAGGCATAGAAATATACTTAAACTCTATGCTTCTTTACTTAAAGGAGGATCGAACCTTTTAGTGTTGGAGTACATGCCAAATGGTAATCTATTTCAAGCTCTCCATGGACAGATAAAAGATGGGAAGCCAGACTTGGACTGGAAACAGAGGTATAAAATTGCTCTGGGAGCTGCGAAAGGAATTGCTTATTTACACCATGACTGTAATCCGCCTATTATTCATAGGGATATAAAATCCAGCAACATTTTGCTTGACGAGGATTATGAGCCAAAAATTGCTGATTTTGGTATAGCAAGGTTTGCAGAAAAATCTGATAAGCAGTTGGGATATAGCTGTCTGGCTGGCACACTTGGTTATATTGCTCCAGAACTTGCTTATGCCACTGACATCACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGGTACTGTTAGAATTAGTGACAGGCAGAGAACCCATTGAAGAGGATTATGGAGAGGCAAAGGATATTGTTTATTGGGTTTTGACTCATCTGAATGACCGTGAAAGTATTCTCAACATTCTTGATGAAAGGGTGGCATCTGAGTCTGTTGAAGATATGATGAAAGTGTTGAAGATTGGCATCAAGTGCACCACTAAGCTTCCTTCTGTGCGTCCCACCATGAGAGAGGTTGTTAAGATGCTAATTGATGCAGAACCTTGTGCATTGAAATCTCCAAAATGCCGTCATCACAAAGACACTAATGCCCTTCTCTGA 2925 0.4044 MAKRPCLLSFFQLLAVLFLTFYSIFPPCVSQTSESHALFQFKNHLKDSLNYLASWNESNSPCDFYGITCDQVSGRVTEISLDNKSLSGVIFPSLSVLQSLQVLSLPSNLISEKLPAEISKCTSLRVLNLTGNQLVGAIPDLSGLRNLQILDLSANYFSGSIPSWVGNLTGLVSLGLGENAYNEGEIPGTLGNLKNLTWLYLGGSHLVGEIPESLYEMKALETLDMSRNKISGRLSRSISKLENLYKIELFSNNLTGEVPAELANLTNLREIDLSANNMYGRLPEEIGNMKNLVVFQLYENRFSGELPIGFADMHHLIGFSIYRNNFTGTIPKDFGRFSALESIDISENQFTGDFPKFLCERSKLRFLLALQNNFSGTFPESYATCKSLERFRISMNQLSGKIPDEVWALPYVKIIDLAYNDFTGVVPSEIGLSTSLNQVVLTKNRFSGKLPSELGRLVNLEKLYLSSNNFSGEIPPEIGSLKQLSSLHVEVNSLTGSIPPELGNCARLVDLNLAWNSLSGNIPQSISLMSSLNSLNISGNKLKGSIPDSLEAIKLSSVDFSENLLSGRIPSGLFIVGGEKAFIGNKGLCFEGNLKPSLNSDLKICAKSHDQPRVPANKFVFIFLIASTFVVILAGLLLLSCRSLKHGAENSMQRQKETSQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGKVYRVELRKNRAMVAVKQLGKIDGVKILAAEMEILGKIRHRNILKLYASLLKGGSNLLVLEYMPNGNLFQALHGQIKDGKPDLDWKQRYKIALGAAKGIAYLHHDCNPPIIHRDIKSSNILLDEDYEPKIADFGIARFAEKSDKQLGYSCLAGTLGYIAPELAYATDITEKSDVYSFGVVLLELVTGREPIEEDYGEAKDIVYWVLTHLNDRESILNILDERVASESVEDMMKVLKIGIKCTTKLPSVRPTMREVVKMLIDAEPCALKSPKCRHHKDTNALL* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0033 974 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Vra2g0033 974 Pfam Leucine rich repeat 76 134 IPR001611 GO:0005515
Vra2g0033 974 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0033 974 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 11 963 - -
Vra2g0033 974 Gene3D Phosphorylase Kinase; domain 1 643 754 - -
Vra2g0033 974 CDD STKc_IRAK 686 951 - -
Vra2g0033 974 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Vra2g0033 974 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Vra2g0033 974 Gene3D Ribonuclease Inhibitor 314 597 IPR032675 -
Vra2g0033 974 SUPERFAMILY Protein kinase-like (PK-like) 677 951 IPR011009 -
Vra2g0033 974 Gene3D Transferase(Phosphotransferase) domain 1 755 966 - -
Vra2g0033 974 SUPERFAMILY L domain-like 58 377 - -
Vra2g0033 974 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Vra2g0033 974 Gene3D Ribonuclease Inhibitor 243 313 IPR032675 -
Vra2g0033 974 Gene3D Ribonuclease Inhibitor 182 242 IPR032675 -
Vra2g0033 974 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Vra2g0033 974 SMART LRR_sd22_2 265 288 - -
Vra2g0033 974 SMART LRR_sd22_2 457 489 - -
Vra2g0033 974 SMART LRR_sd22_2 97 120 - -
Vra2g0033 974 SMART LRR_sd22_2 217 246 - -
Vra2g0033 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 963 - -
Vra2g0033 974 Pfam Protein kinase domain 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0033 974 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Vra2g0033 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Vra2g0033 974 ProSiteProfiles Protein kinase domain profile. 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0033 974 SUPERFAMILY L domain-like 297 524 - -
Vra2g0033 974 SMART LRR_typ_2 265 289 IPR003591 -
Vra2g0033 974 SMART LRR_typ_2 97 121 IPR003591 -
Vra2g0033 974 SMART LRR_typ_2 144 168 IPR003591 -
Vra2g0033 974 SMART LRR_typ_2 457 481 IPR003591 -
Vra2g0033 974 SMART LRR_typ_2 529 553 IPR003591 -
Vra2g0033 974 SMART LRR_typ_2 217 241 IPR003591 -
Vra2g0033 974 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0033 Vra-Chr2 341408 346139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0033 1 961 Receptor kinase-like Gene Family AT1G72180 56.629 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra2g0033 Pkinase 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0033 - - gmx:100789704 1662.51