Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0032 ATGGCAGCTTTTCTCCTTAATCGCTCCTTCTTCTGCCACCTTTTCCTTTTTTGTTGTATTCCTTCTATAAACACACTCTCCACTGTTTCCATTTCTCAAACCCCCCATTCAAACCAAACATTTATTTGCGTCTTGCAACATCCAAATCAACAAGGACAATCAAATCTCAACTGTACAACCTTTCCTCGGACTCAGACTCCGTCTTTTACGCTTGATGTCAATCCTAACGTTACCTACTCTCAGATTGTGGGCGGCAACGGCTTTGTATGTGCTTTGGGGCCATCGTCTTCTTCCATCTCCATCATGGGGTGTTGGAGATTCTCTGCCAATGCTACTACTGTTCCCTATAAGCGCATCTACAATGGACCCCTTCTCCAAGATATTGACAGTAGCCACACCCACGTTTGCGGTCTTGTAAATAATGGTAGTAGTAGCCTTAAGCTTGAGTGTTGGCAATGGCATGACTTCAATTCGAGCAGTGGGAGTGTGAGGAACATGTCAATGTCAAGCATGGCCGTGGGAGAGAATTTTGTGTGTGGCTTATCACCGACGGGGGACGTTAATTGCACAGGCACGGGGAGGGTTAGTAGTAGTAGAGTTGTTGTTGATGTTCCTGCGCCTGGCGGGAATTATAGTTTTGTCGCAGCTGGCTTTAGGCATGCCTGTGTCCTCTCCGGTGATGGTGGTTTGGTTTGTTGGGGAGACATGGAGGGTGAGAAGCCACAAGGGAGGTTCGTTTCATTGGCGTTGGGAGAGAACCGTAGCTGCGCACTCGGGCATGACAGAAGAGTTGTTTGTTGGGGGTCCGATAATTTCACCATGCCGCCCACCTTGAAAGACACTTTTTTTGAGTCAATTGTGGCAGAGAAAAGCGTTTTCTGTGGAGTTGTATCTTCTAATTTTTCCTTGCTCTGTTGGGGTTCTCCATTTTTTGAGTCAGACAGCAAGGTGTTTGAAGATGTCCTCCCTGGACCTTGTAGGAACAAGTGCCCTTGTGGGCCCTTGCCCAACTCTGCCAAACTATGTCAGTCTCCAGACGTCATTTGCCAACCCTGTTACCCTCAAGTGGTTCAATCTTCACCTTCACCTCCACCTCCATCACCATCACCATCACAGCCATCGCTACCATCAAACCACTCTCGTTGGAGCAGCCGAATGGTTGCATTCCTTGTGGTTGGATGTGTGGGGTGCAGTTCCCTGTTGCTAGTCATAGCTTTCTTCCTTCACAGGTACTGCAAGTCTAAACGCAGAGGAAGCCGTGTCCATGATTCTGGCCGGTTGGATGAGTCATCCCACTCTCAACCACAACCCGACGCTGAAGCTGGATCTCGTGTTCTTCAGAAGCGCCTGAGTCACGTGATCAGCATGGGAAATGGGAGCCCTTTGGAGGAGTTTTCTCTGGGGACACTGCTTCAAGTGACCAACAATTTCTCTGAGGAGAAGAGAGTTGGGGTTGGCAGCTTCGGTTCAGTGTATCGTGCCACTTTGGAGGACGGGAAGGAGGTTGCTATAAAAAGAGCCGAAGCTTCATCCTCCACCTACACAGTCTTGGGTGCCCAAGTGGACAAAGACAATGCTTTCGTGAATGAGCTAGAATCTCTCTCCAGACTCCACCACAAGAACCTGGTCCGCTTGGTGGGGTTCTACGAAGACACTAAAGAACGCATTTTGGTGTACGAGTACATGGACAATGGGAGCCTCGGTGACCATCTCCACAAGCTCCAAACTTCAGCTCTAATGTCATGGCCGGTGCGCATCAAGGTGGCTCTGGATGCTGCCAGAGGCATAGAGTACTTACACCAATACGCCACTCCTCCGATCATTCACCGTGACATCAAGTCTGCAAACATATTGTTGGATGCCAAGTGGACTGCCAAAGTCTCTGATTTTGGACTCTCCCTAATGGGACCTGATCCTGAAGATGAGGAGGCTCACCTTTCACTTCTGGCAGCTGGCACTGTTGGCTACATGGACCCTGAATACTACAGGCTTCAACATTTGACCCCCAAGAGTGACGTCTACAGCTTTGGCGTTGTTTTGCTGGAGTTGCTCTCCGGATACAGGGCCATCCATAAAAACGAGAATGGGGTGCCAAGAAATGTGGTTGATTTTGTGGTGCCATTCATTTATCAAGATGAGATTCACAGAGTCTTGGACAAAAGAGTGCCTCCTCCCACGCCTTTTGAGATAGAGGCTGTGGCGTTTGTCGGTTATTTGGCTGCAGATTGTGTCAGGCTCGAAGGTCGTGACAGACCAACAATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCACAACCAACACTCTCTAGGTCCACAACATACTCTTCTTCGCATTAG 2355 0.4883 MAAFLLNRSFFCHLFLFCCIPSINTLSTVSISQTPHSNQTFICVLQHPNQQGQSNLNCTTFPRTQTPSFTLDVNPNVTYSQIVGGNGFVCALGPSSSSISIMGCWRFSANATTVPYKRIYNGPLLQDIDSSHTHVCGLVNNGSSSLKLECWQWHDFNSSSGSVRNMSMSSMAVGENFVCGLSPTGDVNCTGTGRVSSSRVVVDVPAPGGNYSFVAAGFRHACVLSGDGGLVCWGDMEGEKPQGRFVSLALGENRSCALGHDRRVVCWGSDNFTMPPTLKDTFFESIVAEKSVFCGVVSSNFSLLCWGSPFFESDSKVFEDVLPGPCRNKCPCGPLPNSAKLCQSPDVICQPCYPQVVQSSPSPPPPSPSPSQPSLPSNHSRWSSRMVAFLVVGCVGCSSLLLVIAFFLHRYCKSKRRGSRVHDSGRLDESSHSQPQPDAEAGSRVLQKRLSHVISMGNGSPLEEFSLGTLLQVTNNFSEEKRVGVGSFGSVYRATLEDGKEVAIKRAEASSSTYTVLGAQVDKDNAFVNELESLSRLHHKNLVRLVGFYEDTKERILVYEYMDNGSLGDHLHKLQTSALMSWPVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYRAIHKNENGVPRNVVDFVVPFIYQDEIHRVLDKRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPTLSRSTTYSSSH* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0032 784 Pfam Regulator of chromosome condensation (RCC1) repeat 214 235 - -
Vra2g0032 784 PANTHER OJ000114_01.11 PROTEIN 21 772 - -
Vra2g0032 784 MobiDBLite consensus disorder prediction 419 444 - -
Vra2g0032 784 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Vra2g0032 784 Gene3D Transferase(Phosphotransferase) domain 1 562 773 - -
Vra2g0032 784 Gene3D Phosphorylase Kinase; domain 1 439 561 - -
Vra2g0032 784 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 21 772 IPR044815 GO:0004674
Vra2g0032 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Vra2g0032 784 Gene3D - 214 315 IPR009091 -
Vra2g0032 784 SUPERFAMILY Protein kinase-like (PK-like) 452 761 IPR011009 -
Vra2g0032 784 SMART serkin_6 477 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0032 784 Pfam Protein kinase domain 478 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0032 784 ProSiteProfiles Protein kinase domain profile. 477 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0032 784 Gene3D - 47 204 IPR009091 -
Vra2g0032 784 SUPERFAMILY RCC1/BLIP-II 85 310 IPR009091 -
Vra2g0032 784 CDD STKc_IRAK 483 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0032 Vra-Chr2 337856 341055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0032 25 780 Receptor kinase-like Gene Family AT5G47850 49.548 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra2g0032 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0032 - - pvu:PHAVU_011G003100g 1397.49