Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0030 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTCGCTTCTGTTTTATCAAAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGACCTGTGTGCATGGCCATATTTACAATCAAAAATTACAGGAAGTGCATTCAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTACTTGCATCAGGGGGCCAGGAATATGATATTGGAAATGATAGTATAAAGAACCCAAAGGAGCGATTGGTTCGACAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGACGAAGATCTTATGGTGTCCAAATCAGACCCACATCTGAATGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAGACAAAAGGCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAATTTGACTCCAAAAGGCACATGTCCTGATTCACTGAACTACAGTAAGGTATTCATGGATGTGAATCATGACGACGATGGCTTTGAACATGATGGGGATGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGTGTTATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGTGTATTTAAACCTGACTCACACTTGGGTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAACCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTTGATTCAAACTTGAAGAGGCCCAAACTTGAAGATGTGTCATCACCAACCTTTATGGATAGTGTAATGACTTGCAACAATATTACTTCTGAAACCCTTGGATGCAATTTAACTTTGGATTACGAGAATGGGCAATTTAATGGTAATTCCAATGACATGGATCTGGAGTCTCACTCTGATGGCTCACGTGATGCATGCAAAGAGTCTGCCAGTATAACAGAAGAGAAAGGTCATCTTGATGACAATCAGATGCCCTCCGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGGTTTTTGTGTGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCCGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCCTTAGGTGCTGCATTTAAGTATATGCATCCCGCACTAGTAAATGAAACATTGAACATATTGTTGAGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATCTGGTTGCTGTGCGGCAGGAGATGCTGTCTGATTTGCTCGGAGGAGTTCTTCCTGCCTGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGATCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTACTGGCAGAAATCTATTCTCAAGAAGATATGTCGCCAAATATGTATGAAGTTTTGAGATTGGGAGACAAGGAAATGGAAAATGGAGGTGGTGGTGGTGGTGGTGATTGCGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTTCGCTATTCTGCAATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTCCAGAATCTGCTATTGGAAACAAATGAAGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCAAGTTCTTACGGGGCTTCTTGGATTGAACTTGCATCTACACCATTTGGCTCAGCATTAGATGCCTCAAAGATGTACTGGCCTGTTGCTTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATTTGGTATGGAATTTAGTCTTGATTCTATTAAAGGATCTATTCCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTCGGTGCTGATGTGGACACATCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTATGGAGCTCTCTAACCTCTTTCTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGCTCAATAATTCGTCCAAAAACCTTGATGGTATCCCTGGTGCCCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAGTTGCTAAATGTAATCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAGCAACACAAATTGAGTTGGACCGCTTGAGTGTGGATGACGCTATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAGTTCTTGGCAAAGAACATCATGGATGATATTGAATCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGCGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCCGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTACCTTTGATGGCTTCTATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAAGCCCTTGCTGAGCTAATGTATCACTGTGTTGCGCGTAAACCTTGCCCCAATGATAAATTAATTAAGAACATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAGAGTATTGATGATCAGGGTCTTCTGTCTTTTAGAACTCCTGTTAGCAAACAGAAGTCAAAGGTCCACGTGCTAGCTGGTGAAGATCGTTCCAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCCAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTATAGAGGACACCGAGGAAAAGCAAGTTACTGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCCGTGTTAAATGAGTTGAAGCCAAAACTTTTGACGCTTCTCCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACTTCTCTGGCACAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATTCATCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGTTGGGTGTAGAGTTGGTCCCTTATGCTCCTTTATTGGTGGTTCCACTTCTGAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGAGGCCTTCCTCAACCAATTGGACTCGGAGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAATTGCTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTAAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTCCTGAAACGTTTCAAGCTCCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCTGCAATTGTGGCCTCTGATATAGCTGAGCATCGCAGTACAATCGGGAATGAGGATCTTCTGGCATCTTTAATTATCTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAATACGTTGGTTCTGCTCAGGAACGAATACTTCTTCGAGATCAGTTCTGTAAGCATAATGTCATTATAACATCATACGATGTTGTGCGTAAAGATGTTGATTTTCTGGGACAGCTACTCTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTCTTCGATTTTCTGATGCCAGGCTTTCTCGGAACTGAGAGACAGTTCCAAGCTGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTGGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAGCAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACGACAAATGAGTCTGCTGCACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTCTTCCAGGCACTCCAATATTTGCTTAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTTTCTCCCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATATTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCATCGGAAAAGCGATTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTTTTACTGCTTACAACACATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGTGATCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTCAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCAGTGGCTAATGCTGTTATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCGGCAGAAACCTCCAAAAAGGGTGCTAATGCTGTAAAGAGTTCAGAGAACAACTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGAGATTGAAATCGATACTTGGCGGGTTGGAGGAGCTATGGGATCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 6117 0.4152 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASVLSKMSENGISCSIEDLCAWPYLQSKITGSAFRSFDMNKVLEFGALLASGGQEYDIGNDSIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDPHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKGWCEDGGTEASGAQNLTPKGTCPDSLNYSKVFMDVNHDDDGFEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHLGGTLFIELEDKSIPTTLKREREIDLNMQVSADEFDSNLKRPKLEDVSSPTFMDSVMTCNNITSETLGCNLTLDYENGQFNGNSNDMDLESHSDGSRDACKESASITEEKGHLDDNQMPSGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLRMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGGVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQDQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMSPNMYEVLRLGDKEMENGGGGGGGDCDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEMAASSYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENEFGMEFSLDSIKGSIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISWFKEIKLNNSSKNLDGIPGALKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVIKSSGMFDELLTATQIELDRLSVDDAIGFASKIPALCNDSSANEFLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPIEDTEEKQVTVSIESVSDPQTLINNIQVVRSVAPVLNELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRSTIGNEDLLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERILLRDQFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAAPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSPILLELFPAGSDIVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGANAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYTEEYNLSQFLARLNG* 2039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0030 2038 MobiDBLite consensus disorder prediction 245 266 - -
Vra2g0030 2038 CDD DEXHc_Mot1 1442 1674 IPR044078 GO:0005524
Vra2g0030 2038 SUPERFAMILY ARM repeat 6 1481 IPR016024 -
Vra2g0030 2038 CDD SF2_C_SNF 1789 1931 - -
Vra2g0030 2038 Gene3D - 4 94 IPR011989 -
Vra2g0030 2038 Pfam SNF2-related domain 1460 1756 IPR000330 GO:0005524|GO:0140658
Vra2g0030 2038 Gene3D - 490 671 IPR011989 -
Vra2g0030 2038 Gene3D - 1684 2002 IPR027417 -
Vra2g0030 2038 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1810 1966 IPR001650 -
Vra2g0030 2038 Pfam Helicase conserved C-terminal domain 1818 1920 IPR001650 -
Vra2g0030 2038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1425 1674 IPR027417 -
Vra2g0030 2038 MobiDBLite consensus disorder prediction 426 463 - -
Vra2g0030 2038 SMART helicmild6 1834 1920 IPR001650 -
Vra2g0030 2038 Gene3D - 1095 1400 IPR011989 -
Vra2g0030 2038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1675 1976 IPR027417 -
Vra2g0030 2038 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1454 1624 IPR014001 -
Vra2g0030 2038 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1970 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vra2g0030 2038 Gene3D - 1414 1673 IPR038718 -
Vra2g0030 2038 SMART ultradead3 1438 1634 IPR014001 -
Vra2g0030 2038 MobiDBLite consensus disorder prediction 434 459 - -
Vra2g0030 2038 Pfam Domain of unknown function (DUF3535) 777 1231 IPR022707 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0030 Vra-Chr2 310532 331323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0030 1437 1975 RAD5 or RAD16-like Gene Family AT1G02670 25.907 1.30e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra2g0030 DUF3535 1.3e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0030 K15192 - gmx:100777977 3610.85