Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0018 ATGCAACCCAAATCCACCGCCAGACTGCCCAGCTTCCGCTCAACTCCAGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGAAGAACAAGAAGAAGAAGAGGAGGAACAAGTAGATATCCAACAAGCTGAAGAAGAGCCCTTGACCTTTACCCAGCTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCACCATGTCCATGTCCATGTCCATCCCCAATTCAATCGCACCCAAGGAACTTTATGCTTCTGCCCCCCACCTCAAAGTGGACAACATGTTCACGTTTGAGGACTCGGTGCCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTGGATGAGGCGGTAGCATATGTCAAGCTTCTGCAAAAGCAAATTGAGGAACTGACAGAGCACCAACGGAGGTGCAGATGTATGGTTCAAGAATAA 576 0.4965 MQPKSTARLPSFRSTPASWLESVLLKEEEEQEEEEEEQVDIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKLLQKQIEELTEHQRRCRCMVQE* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0018 191 Gene3D - 122 191 IPR036638 GO:0046983
Vra2g0018 191 SMART finulus 127 177 IPR011598 GO:0046983
Vra2g0018 191 Coils Coil 24 47 - -
Vra2g0018 191 MobiDBLite consensus disorder prediction 20 47 - -
Vra2g0018 191 MobiDBLite consensus disorder prediction 26 43 - -
Vra2g0018 191 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 188 - -
Vra2g0018 191 PANTHER TRANSCRIPTION FACTOR BHLH130-LIKE 17 188 - -
Vra2g0018 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 189 IPR036638 GO:0046983
Vra2g0018 191 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Vra2g0018 191 Coils Coil 161 191 - -
Vra2g0018 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0018 Vra-Chr2 253829 256942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0018 94 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 74.490 3.32e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g0018 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0018 - - vun:114169578 296.204