Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0014 ATGACTGTGCAGCTTCCGTGTGACAGTGAGGGCGCCTGCATGCAGTGTAAGGCCGTGCCCGGAGAGGAAGAGAGGCTGCTATGCGTCACCTGCAACACTCCTTGGCACCTTCCATGCCTATCCTCCCCTCCAGCCACCCTTGCAGCCACCGCTAACTGGTCCTGTCCCGACTGCTCCGATATCGATCCTCACTCTTCACCTCTCCCTGCTCCCCTTCGCAATGACCTCGTCACTGCAATGCTTACCATTGAAAATGATGATTCTCTCACCCAATCTCAAAAAGCCAAGAAACGCCAACAACTCATGACTGGAAAAGCTCCTGCACAAGACGAGGATGATGATGATGATGAAGAAGAAGAGAACCAGACTAAATCTACAAATGTTTGGGATATGCTCTCTCGATCTATCAAATGCTCCATCTGCCTCAATTTACCGGAGAGGCCCGTCACGACTCCTTGTGGGCACAGTTTCTGTCTGAAATGTTTCCAGAAATGGCTTCGACAAGGAAACAAGAAATGTGTACAATGCCGCCAGCTTGTTCCGGCAAAGATGACAAGCCAGCCCCGGATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGGTCGTGGAGGAGATAGGACTGTCAACCATTTTTGGCACAATCAAGACAGACCCGATGAGCCCTTTACCACAGAACGTGCTCAGAGGAATGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACCGTTCCTACTGATCATTTTGGCCCAATCACTGCAGAACAGGACCCCATGAGGAATCAGGGTCTGCTGGTGGGTGAGAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGTATTGCTGGTCAGTCAGATCGAGGTGCACAATCCGTTGTCCTTTCTGGTGGTTATGTGGATGACGAAGACCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAGAAGTACAACCTTGCACTTCAAGTTAGCTGTCTTAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCCGAGACTGGCGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCTGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCAGCCCCCTGGACAAGTGATGATCGTGGAGATAGGCCCAGACCCTTACCGGTCATTCGTGAACTGAAAAAGGCCACCGTCACATTTGAAAGGACTGAATCTCCGTCTTGGGATTTTGATGAAGAAGATTCTCTTTGGAAGTGGAAGAAACCACCACCTCCCAGCAAACGAAAGGTGCAAAGTGAGGAACACGTAGAGGGACTAAGGGCAAGGTCAACTAGGGAAACGACGAAGTTCCAACTTGAGATGCTCAAGAAAAGATTGCACATGGGGTTCTCGTGCATGATATGCACGGAGGTTATGGTTTCACCGGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAATTTGCTGGTCAGGCTTTGGTGAAGGAGAGAAGCAGGGGCGGGAGAACGCTTCGGTCCCAAAAAATTGTGATACAATGTCCTTCTTGCCCTATTGACATTTCTGACTATCTTCAGCACATTCAGGTTAATGTAGATTTGAAGGATGCGATTGAGTCACTGAAAGCCAATGTTGCAGAAATTGAAAAATCGCTGGAGTCAATTGGAGATGAAGCAGATGGATTAGATGACAATACTGATTCAGGGAACCAAAATTCTGCTAAGGAGTTGAACGATCTACCTGAAGGATCTGATGTTGATGAGCTTGAGGACACCGGTAATGAGGAGCAAGATCCAGAAGTAATGTGCAATAGAAAGAGAAAGAAAGGTGATGATGAAACACAATCGCCTGATGATAAAATGGATAAAAGAGATAAAATAAACAAAATGACTGAGCAAGAAGTGGATGATAAAAATGATTCTTCATCATCATGTCCTCTCAATCTTCCATGA 2109 0.4732 MTVQLPCDSEGACMQCKAVPGEEERLLCVTCNTPWHLPCLSSPPATLAATANWSCPDCSDIDPHSSPLPAPLRNDLVTAMLTIENDDSLTQSQKAKKRQQLMTGKAPAQDEDDDDDEEEENQTKSTNVWDMLSRSIKCSICLNLPERPVTTPCGHSFCLKCFQKWLRQGNKKCVQCRQLVPAKMTSQPRINSALVFAIRMARTNSNPNGRGGDRTVNHFWHNQDRPDEPFTTERAQRNGRANAASGKIFVTVPTDHFGPITAEQDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPVIRELKKATVTFERTESPSWDFDEEDSLWKWKKPPPPSKRKVQSEEHVEGLRARSTRETTKFQLEMLKKRLHMGFSCMICTEVMVSPVTTPCAHNFCKSCLEGKFAGQALVKERSRGGRTLRSQKIVIQCPSCPIDISDYLQHIQVNVDLKDAIESLKANVAEIEKSLESIGDEADGLDDNTDSGNQNSAKELNDLPEGSDVDELEDTGNEEQDPEVMCNRKRKKGDDETQSPDDKMDKRDKINKMTEQEVDDKNDSSSSCPLNLP* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0014 702 MobiDBLite consensus disorder prediction 88 126 - -
Vra2g0014 702 SUPERFAMILY RING/U-box 137 188 - -
Vra2g0014 702 SUPERFAMILY RING/U-box 510 594 - -
Vra2g0014 702 Pfam SAD/SRA domain 270 418 IPR003105 -
Vra2g0014 702 Pfam Zinc finger, C3HC4 type (RING finger) 138 176 IPR018957 GO:0046872
Vra2g0014 702 MobiDBLite consensus disorder prediction 469 488 - -
Vra2g0014 702 MobiDBLite consensus disorder prediction 650 691 - -
Vra2g0014 702 Pfam RING-type zinc-finger 513 547 IPR027370 -
Vra2g0014 702 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 691 IPR045134 -
Vra2g0014 702 MobiDBLite consensus disorder prediction 608 702 - -
Vra2g0014 702 SUPERFAMILY PUA domain-like 241 439 IPR015947 -
Vra2g0014 702 MobiDBLite consensus disorder prediction 635 649 - -
Vra2g0014 702 SMART ring_2 513 569 IPR001841 -
Vra2g0014 702 SMART ring_2 13 58 IPR001841 -
Vra2g0014 702 SMART ring_2 138 176 IPR001841 -
Vra2g0014 702 Gene3D - 238 435 IPR036987 -
Vra2g0014 702 SMART G9a_1 262 419 IPR003105 -
Vra2g0014 702 CDD RING-HC 138 176 - -
Vra2g0014 702 Coils Coil 583 610 - -
Vra2g0014 702 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Vra2g0014 702 ProSiteProfiles Zinc finger RING-type profile. 513 569 IPR001841 -
Vra2g0014 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 61 IPR013083 -
Vra2g0014 702 ProSiteProfiles YDG domain profile. 267 415 IPR003105 -
Vra2g0014 702 SUPERFAMILY FYVE/PHD zinc finger 5 64 IPR011011 -
Vra2g0014 702 ProSitePatterns Zinc finger RING-type signature. 528 537 IPR017907 -
Vra2g0014 702 SMART Ubox_2 135 193 IPR003613 GO:0004842|GO:0016567
Vra2g0014 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 203 IPR013083 -
Vra2g0014 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 599 IPR013083 -
Vra2g0014 702 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 691 - -
Vra2g0014 702 ProSiteProfiles Zinc finger RING-type profile. 138 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0014 Vra-Chr2 227680 231678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0014 1 604 C2H2 Transcription Factor Family AT5G39550 55.719 0.0 679