Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0009 ATGAGAATGAAGATTTTGCAGTTGTGTTCTCCCATGGCTTCCCCGTGGACATGCAGAGCTCCTCTGCAGGTTGAACTGTGCAAGTTCTGGATTTTGAGAAAAAGGAGAGGTAGCAGTAATTTGCAGGTGCAGTGCTCCGGCAGACCCCCGAGAGCCCCTCCTGGAGTTGACACCAGAATCCACTGGGACAACGAGGATGAAGGGTGGATTGGAGGCGGAGATAGAGATAAAGACACCAAATCCAGCAACATGTTCGCCGACGGTGATGACTTGTCAGATTTGCTCCTCACTTCTTTAGGCTCTCATTACGAATTCTTAGGAGTATCACCCAATGCGGATATAGAAGAAATCAAAGTTGCTTATAGGAAACTATCGAAGGAGTATCATCCTGACACAACCTCCCTCCCTCTGAAAAGTGCGTCGGAAAAATTCATGAAACTGAGAGAGGTTTACAACGTTCTGAGCGATGAAGAGAGTCGAAAATTTTATGATTGGAGCCTTGCTCAAGAGGCTGCAAGCCGACATGCAGAGAAGATGAGAATGAAATTAGAGGATCCTCGGGAGCAACAACTCAGGAACTGGGAACCTGTTCCCGACATGGTCGATCGCCTCGGTGGAAGGAATATGAAGCTCAGTGATCAGGCAGTCTCTGCCATCACTATTGATGTTTTTATCATTATTTTTTCCATATGCTGTATCATTTACGTAATCTTCTTTAGAGAACCATATTACTACTAG 738 0.4566 MRMKILQLCSPMASPWTCRAPLQVELCKFWILRKRRGSSNLQVQCSGRPPRAPPGVDTRIHWDNEDEGWIGGGDRDKDTKSSNMFADGDDLSDLLLTSLGSHYEFLGVSPNADIEEIKVAYRKLSKEYHPDTTSLPLKSASEKFMKLREVYNVLSDEESRKFYDWSLAQEAASRHAEKMRMKLEDPREQQLRNWEPVPDMVDRLGGRNMKLSDQAVSAITIDVFIIIFSICCIIYVIFFREPYYY* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0009 245 Pfam DnaJ domain 102 164 IPR001623 -
Vra2g0009 245 CDD DnaJ 102 156 IPR001623 -
Vra2g0009 245 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 42 243 IPR044618 -
Vra2g0009 245 ProSitePatterns Nt-dnaJ domain signature. 144 163 IPR018253 -
Vra2g0009 245 SUPERFAMILY Chaperone J-domain 100 169 IPR036869 -
Vra2g0009 245 Gene3D DnaJ domain 91 187 IPR036869 -
Vra2g0009 245 PRINTS DnaJ domain signature 103 121 IPR001623 -
Vra2g0009 245 PRINTS DnaJ domain signature 121 136 IPR001623 -
Vra2g0009 245 PRINTS DnaJ domain signature 139 159 IPR001623 -
Vra2g0009 245 ProSiteProfiles dnaJ domain profile. 101 167 IPR001623 -
Vra2g0009 245 SMART dnaj_3 100 159 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0009 Vra-Chr2 163976 165044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0009 102 169 C2H2 Transcription Factor Family AT1G74250 37.500 9.76e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0009 K23051 - gmx:100819309 337.035