Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0004 ATGTTGTTGCAGAAACCCACGATCCACAAAGCTCTAGGGGATATAATGAATGCACTTGAAGATATTGGGGAATTAATTAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTAACGGTATGTATTCTCTTTAGTATAATATTCACTCTCCTTCGATGCACTTACATGGTTGATCAACAGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGACTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGTAGTTTTTGCTTGTGAAGGGACAGAGTTGAAGGGCTACTTGCGAAAACAGGCAAAGAGCAAAACTATAACTAAACACATGCGCAATGGGGGCATAAATAGTTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCATGTTTTCAAGCCGGAAGTCCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGATTGTGAAGGATGACGAGCTCCACATTTTTCCATCGAAGGACAAACTTACTGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACCCTACTAGGGAAAAGAATAGTAGAATCTCCCTTATTTCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAGCATTCATCTGGAACATTGATGTTTATAGACATGATGCAGCGTATGCAAGGACTAGCATCATTTCCAAAAGATGACGAAACTTCTTCACTTCAGGAAGATCTGGGCTTGGGACATAGGAAGCCAGTCACCCCTACCAAAGTTGATAAAGACAATGAATCATGCTCCATGCATGCATTGAGAACGAGTGTAGACTCAGTTAATTGTCTGGACCTGGATTCGTATCATTTGGGCATTCAAAGCAAAGACTTCCATGATCTAACTTGGCGAGAAGAAACATATGAGGATGATGGGGGAATTCACGAGACTCCAATCTATAAGACAAGAGTGTCAAATGAAGCATTTAATGCTGGTCAAATGGAAAATCTTATGGAGATTGAGACTTCTTCGTTGATTGCAGATGCATGCATTAATGACATGAAAGATGAAGAACTTAGTCCACGTTTAACGAATTTCATTAAAAGTGGTGTAGTTCCTGAGTCTCCCATTGATGAAAGAGGGAAATCAGGATACCATTCTGTTATATGTGACTATATTTTACCTGTCAGTGTCCAAAAAGAACAGAATGTTAGTTCTTTAAGCTCAGGGGAAACTAAAATGGTCGACAATGAGAAGGGCACTGATAAGAACGTCTGTACTTCCTCTTTCAATGAAACTCAAAGCCCTTTACTTGACCTGAAGAATTGTACAATTAGAAGAGGACGAGTCTTTCTTTCCCAAACTGAGGAAGGCCATGTACATAACTCTGACCTAAGCCTCGGTGAAGAAGCACTTCCAGCAGATTATGGTGAAATGTCTGAAAGCACTAAACCTTCACGCAAATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAGTATTAAATCTTTTTATTCAACAGTGAACTTTCTGAAGTCATCCCATGCCTCTAATCCCGCACAATATGAGCATGGACGAGGTAAAAGGAAATCAGCATACAATGTGAGAGACTTCATTGAGGAGGAAGCGGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGTGAGGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCACCCAGTCAGCCTCAAGCTAGTAGAATGGACATGATGACAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGAGTAATGGACCGCTTGATTTTTCTGCCACCTTCACTCCCGACTGTGTGACTGTGGCAGCCAGTACTAGTGAAAGTGGGGATTCTTCAGGGAAGTCATTCAATCATTTACATACAGAGCCAACCAAAGAGTCAGCAAATCGGACTTCAGAATCCGTTACCATCAACCAGTTAACCTCAGAAGCAGTGTTTTCAAGTTGTTGTCCTAAGGGAAATGGGACAGAGATAAAAAGTCACAAACGAAGATTGTCATTTTACCACTCTGAACACTTCCCGACTATGAACCTTGAACAAGAATTTGCTCTTCAATCAAAGAAAGAAGTGGGGGATGTGGATGCAATTACAAATGTTTTGTGTGATGATCAGTTTTATAATGATCTCGATCTTGACGAGTTGGAGGCGAAAGCAACTTTGCTTCTAAAACGGAAATTAGATTCGTCCATTCAGAAGCAAGATAAGGTCTCTCAATCTCACTTACCCAACCTTGATATTTTTGGGTCTCCTTCATTTGATCTTGGGATATGA 2451 0.4031 MLLQKPTIHKALGDIMNALEDIGELIRATEFIGQSSGKAMKGQSQKVQQAVLTVCILFSIIFTLLRCTYMVDQQKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLRKQAKSKTITKHMRNGGINSFSFHPSPRMIPHVFKPEVQYVELSIEKFIPRQKIVKDDELHIFPSKDKLTVAEIDLLETYFHPTREKNSRISLISFPHFQTFPSRVHKVKHSSGTLMFIDMMQRMQGLASFPKDDETSSLQEDLGLGHRKPVTPTKVDKDNESCSMHALRTSVDSVNCLDLDSYHLGIQSKDFHDLTWREETYEDDGGIHETPIYKTRVSNEAFNAGQMENLMEIETSSLIADACINDMKDEELSPRLTNFIKSGVVPESPIDERGKSGYHSVICDYILPVSVQKEQNVSSLSSGETKMVDNEKGTDKNVCTSSFNETQSPLLDLKNCTIRRGRVFLSQTEEGHVHNSDLSLGEEALPADYGEMSESTKPSRKFKRLRKAEDTESNRNQKSIKSFYSTVNFLKSSHASNPAQYEHGRGKRKSAYNVRDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAPSQPQASRMDMMTIYRRSLLSQAPSNGPLDFSATFTPDCVTVAASTSESGDSSGKSFNHLHTEPTKESANRTSESVTINQLTSEAVFSSCCPKGNGTEIKSHKRRLSFYHSEHFPTMNLEQEFALQSKKEVGDVDAITNVLCDDQFYNDLDLDELEAKATLLLKRKLDSSIQKQDKVSQSHLPNLDIFGSPSFDLGI* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0004 816 MobiDBLite consensus disorder prediction 664 678 - -
Vra2g0004 816 MobiDBLite consensus disorder prediction 591 607 - -
Vra2g0004 816 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 14 172 IPR001650 -
Vra2g0004 816 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 12 52 - -
Vra2g0004 816 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 74 303 - -
Vra2g0004 816 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 297 781 - -
Vra2g0004 816 MobiDBLite consensus disorder prediction 664 692 - -
Vra2g0004 816 MobiDBLite consensus disorder prediction 519 541 - -
Vra2g0004 816 Gene3D - 7 159 IPR027417 -
Vra2g0004 816 MobiDBLite consensus disorder prediction 588 626 - -
Vra2g0004 816 MobiDBLite consensus disorder prediction 282 303 - -
Vra2g0004 816 PANTHER FANCONI ANEMIA GROUP M PROTEIN 12 52 IPR039686 GO:0006281|GO:0043138
Vra2g0004 816 PANTHER FANCONI ANEMIA GROUP M PROTEIN 74 303 IPR039686 GO:0006281|GO:0043138
Vra2g0004 816 PANTHER FANCONI ANEMIA GROUP M PROTEIN 297 781 IPR039686 GO:0006281|GO:0043138
Vra2g0004 816 MobiDBLite consensus disorder prediction 611 626 - -
Vra2g0004 816 MobiDBLite consensus disorder prediction 513 542 - -
Vra2g0004 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 167 IPR027417 -
Vra2g0004 816 SMART helicmild6 49 125 IPR001650 -
Vra2g0004 816 Pfam Helicase conserved C-terminal domain 74 124 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0004 Vra-Chr2 120886 128886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0004 74 123 Eukaryotic Initiation Factors Gene Family AT3G13920 40.000 9.43e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0004 K10896 - vra:106756418 1565.05