Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0001 ATGCTTGGCAGCAATTCCAGTCAACCAAACCCAACAATTGAGGCNGTGAATCAATTTTACCACCCTCAATCCATTCTACCACCTTCTCTGATATCAGTCTTGAGCTCATCAACATCAGATGGAGAATTGGATTTCTTAAGGAAACGACAAGTAGTGTGGGAGGAATCCTCGGGACCTATATATTATATGCTTAGGAAGGACATTTGTAGCCTTTTCTATGCAAGTTTGCGAAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTAGAGGGTCTGAACTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAATTGTTCAGTCAGTCTCGATGCTTGGTTTTCATCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGGAGTTGTTCCGCTCTCCAGTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGAAATGAATATTATCATATATGTTGGTACTCGAGCTAGTCGAGAGGGTTATGGAGCAGAGTCTGCTGAGGAGAAGCAGAGGCTTTTGAAGTTGATGAGAAACTTCAATTTTAATGGGGAGTCTGGTTCAGAGCCATATACACCCACGGCCATAAACTTCAATTTTATCCCAGAATTTATCTCCAAGAAGTTGTTTATAATTGGTACTCTTCTACGTAACAGTGGAAGTGATGGGTTATTGTAA 735 0.4109 MLGSNSSQPNPTIEAVNQFYHPQSILPPSLISVLSSSTSDGELDFLRKRQVVWEESSGPIYYMLRKDICSLFYASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKIVQSVSMLGFHQNAQQIHGPFLGVVPLSSLSNWAKEFRKWLPEMNIIIYVGTRASREGYGAESAEEKQRLLKLMRNFNFNGESGSEPYTPTAINFNFIPEFISKKLFIIGTLLRNSGSDGLL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0001 244 Gene3D - 66 202 IPR038718 -
Vra2g0001 244 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 75 180 - -
Vra2g0001 244 Pfam SNF2-related domain 110 178 IPR000330 GO:0005524|GO:0140658
Vra2g0001 244 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 75 180 - -
Vra2g0001 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0001 Vra-Chr2 229 10720 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra2g0001 SNF2_N 1.3e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0001 K11367 - vra:106777873 435.647