Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1923 ATGACCTCCATGACACCTTCGCGGGTGACAGGAGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAGTGTAGTTAACACTCGCTTAAGTTCATCTATTGTTAACTCATCTAGCACAGTTACTGGAGCCCGTCGAACAAACCTGGGTCCGGTTTCTGGTGATATGAATAATGTAGGTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACTGATGCAAATTCTGGTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAATACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAACAATATTAGTATTTCAGGCTCATCAGTGATCGATGGTTCCTCTGTAGCACAGCAGAGCTCTCATCAAGATCATAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTGCAAGTGCTACATCGTTGCCTGCGTCTCAATCTGGTCCGTCTTCCCTTCATATGGGTGCGCATGTCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGGTTGGATATCAAGCAGGAAGATATAATGCAGCAGCAGCAGCAGGTCATGCAACAGATTCTTCAAAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCGCAGTTACAGGCTTTATTTCAACAACAGCAGAGACTGAGACAACAACAAATCTTTCAGTCAATGCCCCAATTACAGCGTGTGCACTTGCAGCAACAACAGCAACTACAACAACAACAACAAATGCAATATAGACAGCAATTACAGCAGCAAGTGATGCAGCCCTCTTCTTCTGTCAAGCGCCCATGTGACAATGGTGTCAGTGGGGTTTGTGCTCGTCGACTGATGCAATATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAGGAAACGGTGGTGCTTGTCGTTGTATAACAATGTCGGCCATCATGCGCTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGTGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGTGGCGGAGTCATTGATGAACTGTTGTTTCTGGATTTGCCACGTGAAATAAGATTTTCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTTCGCGAAGGTCAACTTCGCATCATATTCAGTCAAGATTTAAAGATATTATCTTGGGAGTTCTGTGCAAGGCGACATGAAGAACTTCTTCCCCGAAGGTTGGTTGCACCACAGGTCAACCAGTTAGTACATGTAGCTCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGGGCAGATGGGGTTTCTCAACAAGAGTTGCAAACAAAAAGCAACGTGGTGTTGACAACGGGGCGCCAGCTTGCAAAGATGTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTGCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGGCGAGCAAAACGTTGGGGCAATAGAGAGTTTGAAAAGTTATCCTCTACTAACAAATGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGCTGGCAAATGTTCATGGTCTGCCAACTGATAGAAACACGCTCAATAAGCTGATGGCAATGAATTCTGGATTGAACAACCAGATAAACAACGGTCAAAATGTGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTCAGCACTTGCCACCAACTACCAAAATCTTCTCATAAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGCGAAGGATCCTCATTCAATAATTCTAACCCAAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAGTTCCAGGCCCAATGCAAAACTCGCCTGTAGGTGGCTTCCCAGGTTCCCATCAAACCCTGCAGCAGCTGCCGCTGCCGCAACTCCTCCAACAGCGCACATTAAGCGCAAATGGTTTACTGCAACAAAATCATTCACCGGGGTCCCAAGGAAATCAAGCTCTACAGCAGCAGCAGCAGATGATCCACCAACTAGTGAAGGAAGTGTCAAATAACAATGGGGGAATGCAATCCCAGCCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAATGCAATGGGTTTTGGGGGCAATACTCCATCCGGAAGCGGAGGTTCTGCCAATGTTCAACGAAACAATGGACCCATTTCGAGGAATAATAGCTTCAAAACAGCTTCGAACAGTGATTCTTCTGCCGCTGCTGGCAACAGTGGATTCAACCCAAGAACATCTGATATGCCGCAAAGTCTACATTTGCAAGATGTGGTTCAAGACATTGGCCATGAGTTCGCGGATAACCCTTTCTTTAACAGTGATCTTGATGATGAAATGGGTTTTGGCTGGAAGGCATGA 2604 0.4505 MTSMTPSRVTGGLTQSSSHSGIFFQGDGQSQSVVNTRLSSSIVNSSSTVTGARRTNLGPVSGDMNNVGLNSVANSAPSVGASSLVTDANSGLSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVAQQSSHQDHNVQQLQQNQQQLQGAASATSLPASQSGPSSLHMGAHVPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQQVMQQILQRQDSMQLQGRNPQLQALFQQQQRLRQQQIFQSMPQLQRVHLQQQQQLQQQQQMQYRQQLQQQVMQPSSSVKRPCDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRARKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLNEIKFGGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFSQDLKILSWEFCARRHEELLPRRLVAPQVNQLVHVAQKCQSTIAESGADGVSQQELQTKSNVVLTTGRQLAKMLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDICGEQNVGAIESLKSYPLLTNASKLQMQKMQEMEQLANVHGLPTDRNTLNKLMAMNSGLNNQINNGQNVVNRGALSGSAHSALATNYQNLLIRQNSMNSSPGSLQREGSSFNNSNPSPSSALQGAGPSLVPGPMQNSPVGGFPGSHQTLQQLPLPQLLQQRTLSANGLLQQNHSPGSQGNQALQQQQQMIHQLVKEVSNNNGGMQSQPLGGPNANGNMAKNAMGFGGNTPSGSGGSANVQRNNGPISRNNSFKTASNSDSSAAAGNSGFNPRTSDMPQSLHLQDVVQDIGHEFADNPFFNSDLDDEMGFGWKA* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1923 867 MobiDBLite consensus disorder prediction 1 24 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 650 702 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 135 196 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 43 63 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 775 832 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 723 743 - -
Vra1g1923 867 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 166 866 - -
Vra1g1923 867 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 8 154 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 776 832 - -
Vra1g1923 867 MobiDBLite consensus disorder prediction 650 678 - -
Vra1g1923 867 PANTHER LIM DOMAIN-BINDING PROTEIN 166 866 IPR029005 -
Vra1g1923 867 PANTHER LIM DOMAIN-BINDING PROTEIN 8 154 IPR029005 -
Vra1g1923 867 Pfam LIM-domain binding protein 308 568 IPR029005 -
Vra1g1923 867 MobiDBLite consensus disorder prediction 135 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1923 Vra-Chr1 36483371 36490158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1923 303 577 C2H2 Transcription Factor Family AT1G43850 59.636 3.13e-106 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1923 - - pvu:PHAVU_004G121400g 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1923 1 36483371 36490158 Vra1g1923 1 36483371 36490158 ECH