Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1921 ATGCCCCCCATGACACCTTCGCGGGTGACGGGAGGGTTAACCCAATCATCATCATCACATTCTGGAGTTTTCTTTCAAAGAGATGGACTTTCACAGAGTGTAGTTAACTCTCACTTAAGCTCATCTTTTGTTAATTCATCCAGCACGGTTTCGGGAGCCGGTCATTCAAACCTGGGTCTGGTTTCTGGGGATATGAATAATGCAGTTCTAAATAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTACAGCGAAGTGCCAGTGTTAACACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAATAATATTAGTATTTCGGGCTCATCAGTGATTGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCAGCTGCAGGGTGCTTCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGTCCGTCTACCCTTCATATGGGTGCACATGTCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGACTGGATATCAAACAGGAAGATATAATGCAGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCACAGTTACAGGCTTTACTTCAACAACAGCAGAGACTGAGACAACAACAACTCTTTCAGTCAATGCCACAGTTACAGCGAGTGCAGTTGCAACAACAACAGCAGCAACAACAACAACAAATGCAATTGAGGCAGCAGTTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTCAAGCGTCCATACGATAATAGTGTTAGTGGGGTTTGTGCTCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAACGGCCGAATGATAATAGTATTGCGTATTGGAGAAAATTTGTGGCTGAGTACTACTCCCATCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCGCCAGCAGCAATGGATGCGTGGCAGTGTGATATTTGTGGTTCTAAATCTGGAAGGGGATTTGAGGCGACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAATAAGATTTCCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTCCAAGAGAGTGTATATGAGCAGCTTCGCGTTGTTCGTGAAGGCCAACTTCGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTATTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCTGATGGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCGGGACGCCAGCTTGCTAAAATTTTGGAGTTGCAATCACTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATATCGGAGGTTGTCAACAGCATGAAAGACCTAATTGATATTTGTGAAGAGCACAAAATTGGGGCAATTGAGAGTTTAAAAAATTATCCTCGACTAGCAACAGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAACAGATGGCAAGTGTTCATGGTCTGCCTACTGATAGAAACACACTTAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCACATAAACAGCACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTTAGTTCTTACCAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCAATCCTGGATCCTCATTCAATAATTCGAACCCAAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAATTACAGGCTCAATGCAAAACTCTGTAGGTGGTTTCCCAGGTCCCCATCTACCCCCACAGCAGCAGCAGCAGCAGCAACTCCTTCAACAGCGTACATTAAGTGGAAATGGTTTACTGCAACAAAGTCATTCACAGGGATCCCAAGGAAATCAAGCCCTACAGCAGCAGCAGATGATCCAGCAACTGGTGCAGGAAATGTCAAATAACAATGGAGGAATGCAATCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATCTGGCAAAAAATGCACTGGGTTTTGGGGGCCATGCTCCATCCTTAAGTGGAGGTTCTGTCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCAGCTGGTGGCAACAATGGATTCAACCCAAGAACATCTGATATGCCACAAAGTCTACATTTGCAAGGTATGGTTCAGGATATTGGCCATGAGTTCGCGGATAGCTCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTGGATGGAAGGCATGA 2589 0.438 MPPMTPSRVTGGLTQSSSSHSGVFFQRDGLSQSVVNSHLSSSFVNSSSTVSGAGHSNLGLVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHQDQNVQQLQQNQQQQLQGASSATSLPASQTGPSTLHMGAHVPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQVIQQILQRQDSMQLQGRNPQLQALLQQQQRLRQQQLFQSMPQLQRVQLQQQQQQQQQQMQLRQQLQQQVMQPSSAVKRPYDNSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSHRAKKRWCLSLYNNVGHHALGVFPPAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPREIRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELIPRRLVAPQVNQLVQVAQKCQSTIAESGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICEEHKIGAIESLKNYPRLATASKLQMQKMQEMEQMASVHGLPTDRNTLNKLMAMNPGLNNHINSTHNMVNRGALSGSAHLVLTNYQNLLMRQNSMNSSPGSNPGSSFNNSNPSPSSALQGAGPSLITGSMQNSVGGFPGPHLPPQQQQQQQLLQQRTLSGNGLLQQSHSQGSQGNQALQQQQMIQQLVQEMSNNNGGMQSQSLGGPNANGNLAKNALGFGGHAPSLSGGSVNVPGNNGPISRNNSFKTASNSDSSAAGGNNGFNPRTSDMPQSLHLQGMVQDIGHEFADSSFFNSDLDDNMGFGWKA* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1921 862 MobiDBLite consensus disorder prediction 136 179 - -
Vra1g1921 862 MobiDBLite consensus disorder prediction 784 826 - -
Vra1g1921 862 MobiDBLite consensus disorder prediction 748 764 - -
Vra1g1921 862 Pfam LIM-domain binding protein 308 568 IPR029005 -
Vra1g1921 862 MobiDBLite consensus disorder prediction 647 689 - -
Vra1g1921 862 PANTHER LIM DOMAIN-BINDING PROTEIN 8 156 IPR029005 -
Vra1g1921 862 PANTHER LIM DOMAIN-BINDING PROTEIN 171 861 IPR029005 -
Vra1g1921 862 MobiDBLite consensus disorder prediction 748 771 - -
Vra1g1921 862 Coils Coil 265 285 - -
Vra1g1921 862 MobiDBLite consensus disorder prediction 647 709 - -
Vra1g1921 862 MobiDBLite consensus disorder prediction 136 198 - -
Vra1g1921 862 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 171 861 - -
Vra1g1921 862 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 8 156 - -
Vra1g1921 862 MobiDBLite consensus disorder prediction 783 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1921 Vra-Chr1 36465577 36472541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1921 303 572 C2H2 Transcription Factor Family AT1G43850 60.741 1.67e-107 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1921 - - pvu:PHAVU_004G121400g 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1921 1 36465577 36472541 Vra1g1921 1 36465577 36472541 ECH