Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1914 ATGGAAGGTCGTAGTGAAATGGGTATGATGGGAGAGAGTTTTGATACGAGTAATTTGCTGGGGAGGATTAGGGATGATGACTATGAAAGTCGCTCTGAAAGTGATAATTTTGATGGTGGATCTGGTGATGAGCAAGATGTTGGTGATGATCAACCACAGAGAAAGAAGAAGAAATATCACAGACACACTCCTCAGCAGATTCAGGATCTTGAAGCATTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACCGATCTCAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTGAAGTTCTGGTTTCAAAATCGACGAACCCAGATGAAAACACAATTGGAGAGGCACGAGAACATGGTTCTTAAGCAGGAGAATGACAAGCTTCGAGCTGAGAATGGTGTGATGAAGGAAGCTTTGGCTAATCCTATATGTAACAACTGTGGTGGTCCAGCGATTCCTGGTCAAATTTCACTGGAGGAGCACCAGACAAGAATTGAAAATGCTCGATTGAAGGATGAACTGAACCGGATCTGTACATTAGCAAACAAGTTCTTGGGCAGGTCCCTTTCACCAATGGCAAGCCCTATGTCTCTGCCACCCACAAATTCTGGCCTTGAGCTTGCTATTGGAAGAAATGGAATGGGTGGTTCAAGCAATTTTGGCATGCCCGTGCCAATTGGCTTTGATTTGGGTGATGGAGCTTTAGGCTCTTCACCTGCAATGGCAAGTATGGCTGCTAGAGCACCACTGGGAATGATGGGAAACGAAATCCATCTTGAAAGATCAATGCTTATAGATATTGCCATAAATGCTATGGATGAACTGGTTAAGATGGCTCGACAAGATAACCCTCTTTGGATTAAGAGTTCTGACGGTAGGAATGAAGTTCTAAACTGTGATGAATATGCAAGAATGTTTCCTACTTTTGTTGGAACAAAACCTGCTGGATATCTGATTGAAGCTACAAGAGCAACTGGAGTTGTACTAGCCAGCAGCTTGGGCCTTGTGGAAACTTTCATGGATGTGGATCGGTGGCAAGAGATGTTTTCATCTATGGTGGCTAGTGGTTGCACTTTGGATGTGATATCTGGTGGCACAAATGGAACGAGAAATGGAGCTTTGCAAGTGATGTTAGCTGAACTTCAATTGCTTTCCCCACTGGTCCCTACTCGTCAAATGACTTTGCTCAGGTTTTGCAAGCACCATGCTGAAGGTGTATGGGTTGTGGTCGATGTTTCCATTGATATTATGCGTAATGCTTCCAATTCACATCCATCAATGAGTTGCAGGAGGCTTCCTTCTGGTTGTGTTATTCAGGATATGCCCAATGGTTTGTCCAAGATTACTTGGGTTGAACATTCCCAGTATGATGAGAGTGTCATCCACCAACTTTGTCGTCCATTGGTTAGTTCTGGTATTGGCTTTGGTGCTCAGAGATGGATTGCATCTCTCCTAAGACAGTGTGAATGCTTGGCAATCCTCATGACTCCTCCTGGTCCATCTGATGACCCTACAGTCCTTAGCCAATCCAATAGGAGAAGCGTGTTGAAGCTGGCTCAGCGCATGAATGAGTATTTCTGCTCAGGGATTTGTGCTTCATCTGCACGCAAGTGGGATGTTGTTCACATCGGTAATCTTGCTGATGACATGAAAATCATGGCTCGGAAAATTGTGGATGATCCAAATGAGGCTCCTGGCTATGTGTTGAGCGCTTCAACTTGTGTCTGGTTGCCAGTGCCTCGACAAAGGGTGTTTGACTTTTTACGTAATGAACAGCTGAGAGGGGAATGGGACATGTTGTCCAAAGGTGGTCCAATGAAGGAGATGCTCCATGTTCCTAAAGGGCAAGAACATGGAAACTGTGTTTCCATTCTTCACGTAAGTGCCTTCAACAAGTATGCTAATAATGAGGGCAACGTGCTGTATCTGCAAGAATCATGGACCGATGCATCTGGGTCAATGGTGGTGTACTCTCCAATCAACATGCAGTCTTTGAACATGATGATGATGAACACTGGAGATTCATCATTTGTCTCTCTTCGTCCCTCAGGATTTGCTATTCTGCCAGATGGCCATTCAAACAACAGTGACAACAATGATGGTGGTGGTAGCTGTTTGCTGACAGTTGGATTACAAATGGTGCAGAATGACAACCCTTCAGCCAAGTTCACATTGGAGTCAGTTCAAACTGTTAATTCCCTCCTTTCATGCACCATTCAAAAGGTGAAAGAAGCATTGGGAGTTTCCTGA 2253 0.4461 MEGRSEMGMMGESFDTSNLLGRIRDDDYESRSESDNFDGGSGDEQDVGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSPMASPMSLPPTNSGLELAIGRNGMGGSSNFGMPVPIGFDLGDGALGSSPAMASMAARAPLGMMGNEIHLERSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNCDEYARMFPTFVGTKPAGYLIEATRATGVVLASSLGLVETFMDVDRWQEMFSSMVASGCTLDVISGGTNGTRNGALQVMLAELQLLSPLVPTRQMTLLRFCKHHAEGVWVVVDVSIDIMRNASNSHPSMSCRRLPSGCVIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAQRWIASLLRQCECLAILMTPPGPSDDPTVLSQSNRRSVLKLAQRMNEYFCSGICASSARKWDVVHIGNLADDMKIMARKIVDDPNEAPGYVLSASTCVWLPVPRQRVFDFLRNEQLRGEWDMLSKGGPMKEMLHVPKGQEHGNCVSILHVSAFNKYANNEGNVLYLQESWTDASGSMVVYSPINMQSLNMMMMNTGDSSFVSLRPSGFAILPDGHSNNSDNNDGGGSCLLTVGLQMVQNDNPSAKFTLESVQTVNSLLSCTIQKVKEALGVS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1914 750 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Vra1g1914 750 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 6 748 - -
Vra1g1914 750 Gene3D - 43 129 - -
Vra1g1914 750 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vra1g1914 750 SUPERFAMILY Bet v1-like 513 714 - -
Vra1g1914 750 Coils Coil 107 127 - -
Vra1g1914 750 CDD START_ArGLABRA2_like 262 490 - -
Vra1g1914 750 Gene3D - 266 476 IPR023393 -
Vra1g1914 750 SMART HOX_1 55 117 IPR001356 GO:0003677
Vra1g1914 750 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Vra1g1914 750 SUPERFAMILY Homeodomain-like 38 113 IPR009057 -
Vra1g1914 750 SUPERFAMILY Bet v1-like 261 491 - -
Vra1g1914 750 MobiDBLite consensus disorder prediction 19 38 - -
Vra1g1914 750 Pfam START domain 268 491 IPR002913 GO:0008289
Vra1g1914 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 748 IPR042160 -
Vra1g1914 750 MobiDBLite consensus disorder prediction 1 64 - -
Vra1g1914 750 CDD homeodomain 56 113 IPR001356 GO:0003677
Vra1g1914 750 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vra1g1914 750 SMART START_1 267 491 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1914 Vra-Chr1 36382814 36387068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1914 1 747 Homeobox Transcription Factor Family AT3G61150 51.828 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra1g1914 START 9.3e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1914 K09338 - gmx:100820113 1183.7