Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1911 ATGGGTTTTCTCCGGCGACTCTTCGGCGCCAAGAAACACCACAATCCGCCACCCTCCGACGGCTCAGCTCCTAAACCCGCCAAGGACAAGAAAACGTGGAGCTTCGTGAAGCATAGTACGAGGTACAAGTCCACCACGTTGTCCTCACTTAACAACTTTGACCCTTCTACTTCTTCTGCTCCTTTCTCCGACTCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTCGCAGAGGCCGCTCTCGCCGCCGCCCATGCAGCTGCGGAGGTCGTGAGGCTGACCAGCGGCAATGGGCCTCCCGCCGGAAGACCCGCTACGGCCTCTCATCCCCGGCTGGCGGCTGAGAATAACGCCGCCGCCGTGAAGATCCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCTTTGAGAGCACTTAAGGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACTGATATGCTAAGGCGCATGCAGACTTTGGTGCGACTGCAGTCTAGAGCACGTGCCACACGTGGGAACTTGTCTGATAATATGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCTCGGAAGATTATCAGCACTCACTTTATGGCTATAGTACGAAATTTGATGGATCTGTTCTCAAGAGATGTAGTTCTAATGCAAATTTTAGGGACGTTGACATGGAGAAAGCCCGGTTTGATTCCCATTGGCTAGACAATTGGATGGAAGAAAATTATTGGAGCCAAACTAGAGATGGTTCATTGAAAACTGGGAATCTTGATGATGAAAAGAGTGACAAGATTCTTGAAGTGGATACATGGAAGCCACACTTGAATAGTAGTGGCAGCTCATTTCAGGCAGCACAGCATTATTTGTCTTCTGATTACAACAATGAGAATTTTGTGGCATATGAGTCTCCATCAAAACGTTCTTCAAGAACTCTATATCCAAGTCTGTCTTCAAGGGAGGTTCTACCCTTTGGCTCTCTGAAGCTTCAGAGAGGAAAAGAAGAAGCATCTTTGAGAAATGTTGAGGATAGTCCTCAAGCATTCTCTGCATCCTCCAGACATGGAAGTGGTTCAAGGAGAGGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTGTCTTCAGTGGCTATTCTGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAGAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATCGAGTTTGAGAGATATGGTTCCACAAGAAGGTCTCTACAGGGTTTTTGGGATGCAGGACCTAGTTCTGATAGGGATTCTGATTTTAGAAGCAAGGGCTATCCTACCATAAACAGCAGCTTGAACAGAATTGGGAGTGCCAATTTAAGGTGA 1404 0.485 MGFLRRLFGAKKHHNPPPSDGSAPKPAKDKKTWSFVKHSTRYKSTTLSSLNNFDPSTSSAPFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGNGPPAGRPATASHPRLAAENNAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVSEDYQHSLYGYSTKFDGSVLKRCSSNANFRDVDMEKARFDSHWLDNWMEENYWSQTRDGSLKTGNLDDEKSDKILEVDTWKPHLNSSGSSFQAAQHYLSSDYNNENFVAYESPSKRSSRTLYPSLSSREVLPFGSLKLQRGKEEASLRNVEDSPQAFSASSRHGSGSRRGPFTPTKSECAWSVFSGYSGHPNYMSNTESSRAKVRSHSAPRQRIEFERYGSTRRSLQGFWDAGPSSDRDSDFRSKGYPTINSSLNRIGSANLR* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1911 467 MobiDBLite consensus disorder prediction 449 467 - -
Vra1g1911 467 Pfam IQ calmodulin-binding motif 124 143 IPR000048 GO:0005515
Vra1g1911 467 Pfam IQ calmodulin-binding motif 146 163 IPR000048 GO:0005515
Vra1g1911 467 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Vra1g1911 467 MobiDBLite consensus disorder prediction 431 467 - -
Vra1g1911 467 PANTHER IQ-DOMAIN 5-RELATED 1 465 - -
Vra1g1911 467 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Vra1g1911 467 PANTHER CALMODULIN-BINDING PROTEIN 1 465 - -
Vra1g1911 467 MobiDBLite consensus disorder prediction 1 32 - -
Vra1g1911 467 Pfam Protein of unknown function (DUF4005) 357 422 IPR025064 -
Vra1g1911 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 167 IPR027417 -
Vra1g1911 467 MobiDBLite consensus disorder prediction 346 378 - -
Vra1g1911 467 SMART iq_5 121 143 IPR000048 GO:0005515
Vra1g1911 467 SMART iq_5 144 165 IPR000048 GO:0005515
Vra1g1911 467 MobiDBLite consensus disorder prediction 355 378 - -
Vra1g1911 467 Gene3D - 121 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1911 Vra-Chr1 36300475 36305019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1911 1 432 IQD Protein Family AT5G62070 46.756 2.86e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1911 - - pvu:PHAVU_004G120200g 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1911 1 36300475 36305019 Vra8g2267 8 40935398 40939861 PCT